RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRBV6-5A0A0K0K1A5 114 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 COX6A2Q02221 97 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 UBE2E2Q96LR5 201 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 CHCHD5Q9BSY4 110 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 A0A0B4J2C4 111 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 RBMY1BA6NDE4 496 aaKnown RBP8.98□□□□□ -0.97
LDLR-205ENST00000557933 RBMY1EA6NEQ0 496 aaKnown RBP8.98□□□□□ -0.97
LDLR-205ENST00000557933 K7EQG2 157 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 MSMBP08118 114 aa8.98□□□□□ -0.97
LDLR-205ENST00000557933 RBMY1DP0C7P1 496 aaKnown RBP8.98□□□□□ -0.97
LDLR-205ENST00000557933 ITPR3Q14573 2671 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 PSMB8P28062 276 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 RHOHQ15669 191 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 Q8N2B8 174 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 C10orf105Q8TEF2 133 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 DGAT2L7PQ6IED9 249 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 XCL2Q9UBD3 114 aa8.97□□□□□ -0.97
LDLR-205ENST00000557933 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.96□□□□□ -0.97
LDLR-205ENST00000557933 IGHV1-58A0A0C4DH39 117 aa8.96□□□□□ -0.97
LDLR-205ENST00000557933 TRBV10-2A0A0K0K1G8 114 aa8.96□□□□□ -0.97
LDLR-205ENST00000557933 TMEM262E9PQX1 116 aa8.96□□□□□ -0.97
LDLR-205ENST00000557933 GAGE5Q13069 117 aa8.96□□□□□ -0.97
LDLR-205ENST00000557933 GAGE6Q13070 117 aa8.96□□□□□ -0.97
LDLR-205ENST00000557933 LINC00694P0DN24 101 aa8.96□□□□□ -0.98
LDLR-205ENST00000557933 SMIM20Q8N5G0 67 aa8.96□□□□□ -0.98
LDLR-205ENST00000557933 VSIG2Q96IQ7 327 aa8.96□□□□□ -0.98
LDLR-205ENST00000557933 LINC01587Q99440 93 aa8.96□□□□□ -0.98
LDLR-205ENST00000557933 Q9H8V8 135 aa8.96□□□□□ -0.98
LDLR-205ENST00000557933 RPL32P62910 135 aaKnown RBP8.95□□□□□ -0.98
LDLR-205ENST00000557933 IFITM1P13164 125 aa8.95□□□□□ -0.98
LDLR-205ENST00000557933 CHCHD7Q9BUK0 85 aa8.94□□□□□ -0.98
LDLR-205ENST00000557933 TRGV11A0A075B6L2 103 aa8.94□□□□□ -0.98
LDLR-205ENST00000557933 PIK3CD-AS1Q5SR53 167 aa8.94□□□□□ -0.98
LDLR-205ENST00000557933 TMEM61Q8N0U2 210 aa8.94□□□□□ -0.98
LDLR-205ENST00000557933 UBE2D4Q9Y2X8 147 aa8.94□□□□□ -0.98
LDLR-205ENST00000557933 MRPS36P82909 103 aaKnown RBP8.94□□□□□ -0.98
LDLR-205ENST00000557933 A0A1W2PRX2 142 aa8.93□□□□□ -0.98
LDLR-205ENST00000557933 MIAQ16674 131 aa8.93□□□□□ -0.98
LDLR-205ENST00000557933 Q9HAA7 133 aa8.93□□□□□ -0.98
LDLR-205ENST00000557933 TRBV30A0A0K0K1B3 111 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 COX6CP09669 75 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 MEIG1Q5JSS6 88 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 TMEM101Q96IK0 257 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE12JA6NER3 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE7O76087 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE12FP0CL80 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE12GP0CL81 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE12IP0CL82 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 GAGE4Q13068 117 aa8.92□□□□□ -0.98
LDLR-205ENST00000557933 CITED2Q99967 270 aaPredicted RBP8.92□□□□□ -0.98
LDLR-205ENST00000557933 TRBV7-9A0A0J9YWB2 115 aa8.91□□□□□ -0.98
LDLR-205ENST00000557933 SOSTDC1Q6X4U4 206 aa8.91□□□□□ -0.98
LDLR-205ENST00000557933 A0A096LNT2 108 aa8.91□□□□□ -0.98
LDLR-205ENST00000557933 K7EMT4 169 aa8.91□□□□□ -0.98
LDLR-205ENST00000557933 TOMM7Q9P0U1 55 aa8.91□□□□□ -0.98
LDLR-205ENST00000557933 TRGV1A0A0A0MS02 117 aa8.9□□□□□ -0.98
LDLR-205ENST00000557933 H3BUA1 57 aa8.9□□□□□ -0.98
LDLR-205ENST00000557933 C11orf68Q9H3H3 251 aaKnown RBP8.9□□□□□ -0.98
LDLR-205ENST00000557933 VWFP04275 2813 aa8.9□□□□□ -0.99
LDLR-205ENST00000557933 DEFB113Q30KQ7 82 aa8.89□□□□□ -0.99
LDLR-205ENST00000557933 LST1O00453 97 aa8.89□□□□□ -0.99
LDLR-205ENST00000557933 PRIMA1Q86XR5 153 aa8.89□□□□□ -0.99
LDLR-205ENST00000557933 FAM236AA0A1B0GUQ0 79 aa8.88□□□□□ -0.99
LDLR-205ENST00000557933 FAM236BA0A1B0GV22 79 aa8.88□□□□□ -0.99
LDLR-205ENST00000557933 FAM218AQ96MZ4 157 aa8.88□□□□□ -0.99
LDLR-205ENST00000557933 LINC00308Q8TCZ7 52 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 SMCR5Q8TEV8 140 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 LOC100131303A0A0U1RQF7 123 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 TINCRA0A1B0GVN0 87 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 HERV-K104P63124 156 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 B4DSR2 109 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 LINC00242Q5T6M2 205 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 WFDC10AQ9H1F0 79 aa8.87□□□□□ -0.99
LDLR-205ENST00000557933 Q6ZTI0 123 aa8.86□□□□□ -0.99
LDLR-205ENST00000557933 J3QLI3 93 aa8.86□□□□□ -0.99
LDLR-205ENST00000557933 SHISA2Q6UWI4 295 aa8.86□□□□□ -0.99
LDLR-205ENST00000557933 DAZ2Q13117 558 aaKnown RBP8.85□□□□□ -0.99
LDLR-205ENST00000557933 DAZ4Q86SG3 579 aaKnown RBP8.85□□□□□ -0.99
LDLR-205ENST00000557933 DYNLRB2Q8TF09 96 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 SPANXDQ9BXN6 97 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 DAZ3Q9NR90 486 aaKnown RBP8.85□□□□□ -0.99
LDLR-205ENST00000557933 SPANXCQ9NY87 97 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 PYGO1Q9Y3Y4 419 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 BRI3O95415 125 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 C9orf129Q5T035 196 aaKnown RBP8.85□□□□□ -0.99
LDLR-205ENST00000557933 KLK5Q9Y337 293 aaPredicted RBP8.85□□□□□ -0.99
LDLR-205ENST00000557933 ITPR2Q14571 2701 aa8.85□□□□□ -0.99
LDLR-205ENST00000557933 ATP5G1P05496 136 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 ZNF415Q09FC8 603 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 Q96MF0 132 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 MAP6D1Q9H9H5 199 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 GAGE2AQ6NT46 116 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 NTM-AS1Q6ZSK4 140 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 KRTAP1-3Q8IUG1 177 aa8.84□□□□□ -0.99
LDLR-205ENST00000557933 C11orf72Q8NBR9 251 aa8.83□□□□□ -1
LDLR-205ENST00000557933 LINC01356Q8N9X3 169 aa8.83□□□□□ -1
LDLR-205ENST00000557933 ZNF702PQ9H963 129 aa8.83□□□□□ -1
LDLR-205ENST00000557933 SPANXA1Q9NS26 97 aa8.83□□□□□ -1
LDLR-205ENST00000557933 SMIM1B2RUZ4 78 aa8.82□□□□□ -1
LDLR-205ENST00000557933 PFN2P35080 140 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms