RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 COX11Q9Y6N1 276 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 LRCOL1A6NCL2 159 aa9.51□□□□□ -0.89
USP3-205ENST00000557884 MT-ND6P03923 174 aa9.51□□□□□ -0.89
USP3-205ENST00000557884 ZNF25P17030 456 aaPredicted RBP9.51□□□□□ -0.89
USP3-205ENST00000557884 RAB5AP20339 215 aa9.51□□□□□ -0.89
USP3-205ENST00000557884 WFDC2Q14508 124 aa9.51□□□□□ -0.89
USP3-205ENST00000557884 BAALCQ8WXS3 180 aa9.51□□□□□ -0.89
USP3-205ENST00000557884 RPL39P62891 51 aaKnown RBP9.5□□□□□ -0.89
USP3-205ENST00000557884 DGAT2L7PQ6IED9 249 aa9.5□□□□□ -0.89
USP3-205ENST00000557884 MRPL52Q86TS9 123 aaKnown RBP9.5□□□□□ -0.89
USP3-205ENST00000557884 Q8N8P6 123 aa9.5□□□□□ -0.89
USP3-205ENST00000557884 PRSS47A8MTI9 375 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 IFI27P40305 119 aaPredicted RBP9.49□□□□□ -0.89
USP3-205ENST00000557884 TMEM18Q96B42 140 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 YPEL4Q96NS1 127 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 ALKBH7Q9BT30 221 aaPredicted RBP9.49□□□□□ -0.89
USP3-205ENST00000557884 SMCO4Q9NRQ5 59 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 UBE2D4Q9Y2X8 147 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 TRAPPC1Q9Y5R8 145 aa9.49□□□□□ -0.89
USP3-205ENST00000557884 C16orf90A8MZG2 172 aa9.48□□□□□ -0.89
USP3-205ENST00000557884 RNASE13Q5GAN3 156 aaKnown RBP9.48□□□□□ -0.89
USP3-205ENST00000557884 TRAV8-4A0A0B4J246 113 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 SMAGPQ0VAQ4 97 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 KRTAP26-1Q6PEX3 210 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 Q6ZUT4 128 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 ZNF664Q8N3J9 261 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 Q8N814 137 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 NXT2Q9NPJ8 142 aaKnown RBP9.47□□□□□ -0.89
USP3-205ENST00000557884 CDC42SE2Q9NRR3 84 aa9.47□□□□□ -0.89
USP3-205ENST00000557884 GAGE12HA6NDE8 117 aa9.45□□□□□ -0.9
USP3-205ENST00000557884 PRSS3P2Q8NHM4 247 aa9.45□□□□□ -0.9
USP3-205ENST00000557884 CHCHD10Q8WYQ3 142 aaPredicted RBP9.45□□□□□ -0.9
USP3-205ENST00000557884 OPRPNQ99935 248 aaPredicted RBP9.45□□□□□ -0.9
USP3-205ENST00000557884 TIMM21Q9BVV7 248 aa9.45□□□□□ -0.9
USP3-205ENST00000557884 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.44□□□□□ -0.9
USP3-205ENST00000557884 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 USP17L23D6RBM5 183 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 XCL1P47992 114 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 ORMDL2Q53FV1 153 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 SPANXA1Q9NS26 97 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
USP3-205ENST00000557884 CSDC2Q9Y534 153 aaKnown RBP9.44□□□□□ -0.9
USP3-205ENST00000557884 APOBP04114 4563 aaKnown RBP9.44□□□□□ -0.9
USP3-205ENST00000557884 IGLV5-52A0A0A0MRZ9 124 aa9.43□□□□□ -0.9
USP3-205ENST00000557884 CYSLTR1Q9Y271 337 aa9.43□□□□□ -0.9
USP3-205ENST00000557884 DNAH8Q96JB1 4490 aa9.43□□□□□ -0.9
USP3-205ENST00000557884 TRAV13-1A0A0B4J241 112 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 CCL25O15444 150 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 SCO1O75880 301 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 C2orf66Q6UXQ4 117 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 FA2HQ7L5A8 372 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 FAM104AQ969W3 186 aa9.42□□□□□ -0.9
USP3-205ENST00000557884 K7EMI3 77 aa9.41□□□□□ -0.9
USP3-205ENST00000557884 SS18Q15532 418 aa9.41□□□□□ -0.9
USP3-205ENST00000557884 CDPF1Q6NVV7 123 aa9.41□□□□□ -0.9
USP3-205ENST00000557884 NTN5Q8WTR8 489 aaPredicted RBP9.41□□□□□ -0.9
USP3-205ENST00000557884 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
USP3-205ENST00000557884 MRPS36P82909 103 aaKnown RBP9.4□□□□□ -0.9
USP3-205ENST00000557884 FOXI1Q12951 378 aa9.4□□□□□ -0.9
USP3-205ENST00000557884 C14orf177Q52M58 125 aa9.4□□□□□ -0.9
USP3-205ENST00000557884 C18orf32Q8TCD1 76 aa9.4□□□□□ -0.9
USP3-205ENST00000557884 IFITM10A6NMD0 228 aa9.39□□□□□ -0.91
USP3-205ENST00000557884 PRSS1P07477 247 aa9.39□□□□□ -0.91
USP3-205ENST00000557884 ZC2HC1BQ5TFG8 222 aa9.39□□□□□ -0.91
USP3-205ENST00000557884 PYGO1Q9Y3Y4 419 aa9.39□□□□□ -0.91
USP3-205ENST00000557884 KRTAP10-1P60331 282 aa9.38□□□□□ -0.91
USP3-205ENST00000557884 HSPG2P98160 4391 aa9.38□□□□□ -0.91
USP3-205ENST00000557884 hDV102S1A0JD36 115 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 LINC01546A6NGU7 62 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 COLCA2A8K830 154 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 C1orf196B1AJZ1 125 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 TRGC2P03986 189 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 GCSHP23434 173 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 G0S2P27469 103 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 C15orf56Q8N910 161 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 TOMM6Q96B49 74 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 URB1-AS1Q96HZ7 61 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 TMEM141Q96I45 108 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 KIAA1109Q2LD37 5005 aa9.37□□□□□ -0.91
USP3-205ENST00000557884 IGIPA6NJ69 53 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 LINC01620Q4KN68 170 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 HIGD2BQ4VC39 106 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 Q6ZN92 141 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 SCGB3A1Q96QR1 104 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 AP5S1Q9NUS5 200 aa9.36□□□□□ -0.91
USP3-205ENST00000557884 LINC00614P0C842 121 aa9.35□□□□□ -0.91
USP3-205ENST00000557884 CFAP161Q6P656 301 aa9.35□□□□□ -0.91
USP3-205ENST00000557884 TEX43Q6ZNM6 134 aa9.35□□□□□ -0.91
USP3-205ENST00000557884 RYR1P21817 5038 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 HERC2O95714 4834 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 COX7A2LO14548 114 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 PMCHL1Q16048 86 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 LINC00173Q6ZV60 143 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 C5orf38Q86SI9 138 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 TIMM17AQ99595 171 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 C2orf88Q9BSF0 95 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 VCX2Q9H322 139 aa9.34□□□□□ -0.91
USP3-205ENST00000557884 RAB5BP61020 215 aa9.33□□□□□ -0.92
USP3-205ENST00000557884 AMELXQ99217 191 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms