RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 FN1P02751 2386 aaKnown RBP9.18□□□□□ -0.94
SHMT2-229ENST00000557348 AGRNO00468 2067 aa9.18□□□□□ -0.94
SHMT2-229ENST00000557348 A0A0J9YY99 117 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE2BQ13066 116 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 KRTAP21-3Q3LHN1 58 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE2EQ4V326 116 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 C2orf66Q6UXQ4 117 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 IL17DQ8TAD2 202 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 CARD19Q96LW7 228 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE2DQ9UEU5 116 aa9.17□□□□□ -0.94
SHMT2-229ENST00000557348 PRSS29PA6NIE9 313 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 SNCGO76070 127 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 PMVKQ15126 192 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 DNAJC30Q96LL9 226 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 FAM240AA0A1B0GVK7 77 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE12JA6NER3 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 RS1O15537 224 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE7O76087 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 IGHV3-30P01768 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE12FP0CL80 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE12GP0CL81 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE12IP0CL82 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 IGHV3-30-5P0DP03 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 GAGE4Q13068 117 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 MUC4Q99102 2169 aa9.16□□□□□ -0.94
SHMT2-229ENST00000557348 I3L3M4 83 aa9.15□□□□□ -0.94
SHMT2-229ENST00000557348 TCL1BO95988 128 aa9.15□□□□□ -0.94
SHMT2-229ENST00000557348 DAZ2Q13117 558 aaKnown RBP9.15□□□□□ -0.94
SHMT2-229ENST00000557348 RNF183Q96D59 192 aa9.15□□□□□ -0.94
SHMT2-229ENST00000557348 ANK3Q12955 4377 aaKnown RBP9.15□□□□□ -0.94
SHMT2-229ENST00000557348 IGHV3OR16-12A0A075B7B8 117 aa9.14□□□□□ -0.95
SHMT2-229ENST00000557348 SLC25A20O43772 301 aa9.14□□□□□ -0.95
SHMT2-229ENST00000557348 ATXN8Q156A1 80 aa9.14□□□□□ -0.95
SHMT2-229ENST00000557348 WFDC9Q8NEX5 89 aa9.14□□□□□ -0.95
SHMT2-229ENST00000557348 WIPF1O43516 503 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 IGHV3-53P01767 116 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 RPL35AP18077 110 aaKnown RBP9.13□□□□□ -0.95
SHMT2-229ENST00000557348 TTC32Q5I0X7 151 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 TNFRSF18Q9Y5U5 241 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 SORL1Q92673 2214 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 GIG44P09565 113 aaPredicted RBP9.13□□□□□ -0.95
SHMT2-229ENST00000557348 CFC1BP0CG36 223 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 CFC1P0CG37 223 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 IFITM1P13164 125 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 CFAP161Q6P656 301 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 ANKRD29Q8N6D5 301 aa9.13□□□□□ -0.95
SHMT2-229ENST00000557348 TRAV4A0A0B4J268 109 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 TRBV30A0A0K0K1B3 111 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 IGIPA6NJ69 53 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 NDUFV3P56181 108 aaKnown RBP9.12□□□□□ -0.95
SHMT2-229ENST00000557348 CSNK1G2-AS1Q8NCQ2 148 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 KIR2DL5BQ8NHK3 375 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 PLEKHB2Q96CS7 222 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 JMJD1CQ15652 2540 aa9.12□□□□□ -0.95
SHMT2-229ENST00000557348 TRGV1A0A0A0MS02 117 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 TRBV10-1A0A0K0K1A3 114 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 SMIM9A6NGZ8 99 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 H3BT86 120 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 OVOL2Q9BRP0 275 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 WFDC10AQ9H1F0 79 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 WNK1Q9H4A3 2382 aa9.11□□□□□ -0.95
SHMT2-229ENST00000557348 TRBV10-2A0A0K0K1G8 114 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 LEPROTO15243 131 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 IMUPQ9GZP8 106 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 TMEM126AQ9H061 195 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 TP53TG1Q9Y2A0 90 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 IGLV4-69A0A075B6H9 119 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 IGHV3-33P01772 117 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 LGALS3P17931 250 aaKnown RBP9.1□□□□□ -0.95
SHMT2-229ENST00000557348 APOC4P55056 127 aa9.1□□□□□ -0.95
SHMT2-229ENST00000557348 J3QQQ9 107 aa9.09□□□□□ -0.95
SHMT2-229ENST00000557348 ACYP1P07311 99 aa9.09□□□□□ -0.95
SHMT2-229ENST00000557348 DEFB121Q5J5C9 76 aa9.09□□□□□ -0.95
SHMT2-229ENST00000557348 TSHBP01222 138 aa9.08□□□□□ -0.96
SHMT2-229ENST00000557348 COX6CP09669 75 aa9.08□□□□□ -0.96
SHMT2-229ENST00000557348 PRIMA1Q86XR5 153 aa9.08□□□□□ -0.96
SHMT2-229ENST00000557348 C20orf203Q8NBC4 194 aa9.08□□□□□ -0.96
SHMT2-229ENST00000557348 IGHV3-73A0A0B4J1V6 119 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 TRAV8-4A0A0B4J246 113 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 PRM2P04554 102 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 SHISA2Q6UWI4 295 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 PYGO1Q9Y3Y4 419 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 C9JAW5 83 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 K7EQD1 137 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 ATP5G1P05496 136 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 NHLRC4P0CG21 123 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-229ENST00000557348 RPL36AP83881 106 aaKnown RBP9.07□□□□□ -0.96
SHMT2-229ENST00000557348 LINC01620Q4KN68 170 aa9.07□□□□□ -0.96
SHMT2-229ENST00000557348 RPL36ALQ969Q0 106 aaKnown RBP9.07□□□□□ -0.96
SHMT2-229ENST00000557348 NOP10Q9NPE3 64 aaKnown RBP9.07□□□□□ -0.96
SHMT2-229ENST00000557348 TRGV2A0A075B6R0 118 aa9.06□□□□□ -0.96
SHMT2-229ENST00000557348 Q6ZTI0 123 aa9.06□□□□□ -0.96
SHMT2-229ENST00000557348 AMELXQ99217 191 aa9.06□□□□□ -0.96
SHMT2-229ENST00000557348 PLAC8L1A1L4L8 177 aa9.05□□□□□ -0.96
SHMT2-229ENST00000557348 TMEM170BQ5T4T1 132 aa9.05□□□□□ -0.96
SHMT2-229ENST00000557348 DAZ4Q86SG3 579 aaKnown RBP9.05□□□□□ -0.96
SHMT2-229ENST00000557348 DAZ3Q9NR90 486 aaKnown RBP9.05□□□□□ -0.96
SHMT2-229ENST00000557348 TRBV7-7A0A0K0K1E9 115 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 TRBV6-4A0A1B0GX49 114 aa9.04□□□□□ -0.96
SHMT2-229ENST00000557348 TMEM223A0PJW6 202 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms