RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TMEM101Q96IK0 257 aa8.56□□□□□ -1.04
SHMT2-227ENST00000557269 AP5S1Q9NUS5 200 aa8.56□□□□□ -1.04
SHMT2-227ENST00000557269 CYSLTR1Q9Y271 337 aa8.56□□□□□ -1.04
SHMT2-227ENST00000557269 CSDC2Q9Y534 153 aaKnown RBP8.56□□□□□ -1.04
SHMT2-227ENST00000557269 TRAV8-3A0A0A6YYJ7 113 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 IGIPA6NJ69 53 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 NUPR1O60356 82 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BKO60814 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BJP06899 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BOP23527 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BBP33778 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BDP58876 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BCP62807 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST2H2BEQ16778 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.55□□□□□ -1.04
SHMT2-227ENST00000557269 DGAT2L7PQ6IED9 249 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 BAGE3Q86Y29 109 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BHQ93079 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 TOMM6Q96B49 74 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BNQ99877 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 HIST1H2BMQ99879 126 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 SPANXA1Q9NS26 97 aa8.55□□□□□ -1.04
SHMT2-227ENST00000557269 IGLV10-54A0A075B6I4 117 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 CRPP02741 224 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 RAB5BP61020 215 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 ZC2HC1BQ5TFG8 222 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 KRTAP26-1Q6PEX3 210 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 MAPKAPK5-AS1Q8N8E1 139 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 PYGO1Q9Y3Y4 419 aa8.54□□□□□ -1.04
SHMT2-227ENST00000557269 IGLV4-3A0A075B6K6 122 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 IGKV2D-24A0A075B6R9 120 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 SERF1AO75920 110 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 MRPS36P82909 103 aaKnown RBP8.53□□□□□ -1.04
SHMT2-227ENST00000557269 MIAQ16674 131 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 NFE4Q86UQ8 179 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 CHCHD1Q96BP2 118 aaKnown RBP8.53□□□□□ -1.04
SHMT2-227ENST00000557269 DNAH10Q8IVF4 4471 aa8.53□□□□□ -1.04
SHMT2-227ENST00000557269 LINC00959A0A1B0GUT2 108 aa8.52□□□□□ -1.05
SHMT2-227ENST00000557269 TNP2Q05952 138 aa8.52□□□□□ -1.05
SHMT2-227ENST00000557269 SMAGPQ0VAQ4 97 aa8.52□□□□□ -1.05
SHMT2-227ENST00000557269 FAM19A2Q8N3H0 131 aa8.52□□□□□ -1.05
SHMT2-227ENST00000557269 SCGB3A1Q96QR1 104 aa8.52□□□□□ -1.05
SHMT2-227ENST00000557269 DNAH17Q9UFH2 4485 aa8.51□□□□□ -1.05
SHMT2-227ENST00000557269 G0S2P27469 103 aa8.51□□□□□ -1.05
SHMT2-227ENST00000557269 PDZD11Q5EBL8 140 aa8.51□□□□□ -1.05
SHMT2-227ENST00000557269 LINC00173Q6ZV60 143 aa8.51□□□□□ -1.05
SHMT2-227ENST00000557269 FRAS1Q86XX4 4008 aa8.51□□□□□ -1.05
SHMT2-227ENST00000557269 TRAV13-1A0A0B4J241 112 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 C1orf196B1AJZ1 125 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 HBDP02042 147 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 ERASQ7Z444 233 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 CHCHD10Q8WYQ3 142 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-227ENST00000557269 TMEM141Q96I45 108 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 TIMM17AQ99595 171 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 C1orf43Q9BWL3 253 aa8.5□□□□□ -1.05
SHMT2-227ENST00000557269 TRAV8-4A0A0B4J246 113 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 PRSS29PA6NIE9 313 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 HSBP1O75506 76 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 WFDC2Q14508 124 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 BAALCQ8WXS3 180 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 RMI2Q96E14 147 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 AMELXQ99217 191 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 TM2D2Q9BX73 214 aa8.49□□□□□ -1.05
SHMT2-227ENST00000557269 FAT2Q9NYQ8 4349 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 LRCOL1A6NCL2 159 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 GAGE12HA6NDE8 117 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 IFITM10A6NMD0 228 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 CCL25O15444 150 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 PSCAO43653 123 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 XCL1P47992 114 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 NDUFA6P56556 154 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 VCX2Q9H322 139 aa8.48□□□□□ -1.05
SHMT2-227ENST00000557269 LECT2O14960 151 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 NPSP0C0P6 89 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 FOXI1Q12951 378 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 SS18Q15532 418 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 TEX43Q6ZNM6 134 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 LINC00336Q6ZUF6 198 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 COX11Q9Y6N1 276 aa8.47□□□□□ -1.05
SHMT2-227ENST00000557269 A0A087WTM6 91 aa8.46□□□□□ -1.06
SHMT2-227ENST00000557269 LINC01549A6NIU2 74 aa8.46□□□□□ -1.06
SHMT2-227ENST00000557269 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.46□□□□□ -1.06
SHMT2-227ENST00000557269 UBE2D1P51668 147 aa8.46□□□□□ -1.06
SHMT2-227ENST00000557269 COA6Q5JTJ3 125 aaKnown RBP8.46□□□□□ -1.06
SHMT2-227ENST00000557269 Q6ZN92 141 aa8.46□□□□□ -1.06
SHMT2-227ENST00000557269 A0A1B0GVY2 172 aa8.45□□□□□ -1.06
SHMT2-227ENST00000557269 COX6A2Q02221 97 aa8.45□□□□□ -1.06
SHMT2-227ENST00000557269 LINC00242Q5T6M2 205 aa8.45□□□□□ -1.06
SHMT2-227ENST00000557269 CST9LQ9H4G1 147 aa8.45□□□□□ -1.06
SHMT2-227ENST00000557269 ATP5LO75964 103 aa8.44□□□□□ -1.06
SHMT2-227ENST00000557269 FUSP35637 526 aaKnown RBP eCLIP8.44□□□□□ -1.06
SHMT2-227ENST00000557269 CD164L2Q6UWJ8 174 aa8.44□□□□□ -1.06
SHMT2-227ENST00000557269 USP17L23D6RBM5 183 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 FABP4P15090 132 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 PMVKQ15126 192 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 PAPPA-AS1Q5QFB9 102 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 IFI27L1Q96BM0 104 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 C2orf88Q9BSF0 95 aa8.43□□□□□ -1.06
SHMT2-227ENST00000557269 IGHV3OR16-9A0A0B4J2B5 98 aa8.42□□□□□ -1.06
SHMT2-227ENST00000557269 A0A0J9YXV3 536 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms