RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 RPL39LQ96EH5 51 aaKnown RBP8.13□□□□□ -1.11
VPS33B-204ENST00000554660 VPS25Q9BRG1 176 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 TRGV11A0A075B6L2 103 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 DEFB131BA0A096LNP1 70 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 IGHV3-16A0A0C4DH30 117 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 KNCNA6PVL3 124 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 GNRH2O43555 120 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 P0DMU3 169 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 FAM231AP0DMU4 169 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 FAM231CP0DMU5 169 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 LYRM7Q5U5X0 104 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 SUMO4Q6EEV6 95 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 ZFP2Q6ZN57 461 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 FOXI2Q6ZQN5 318 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 MAPKAPK5-AS1Q8N8E1 139 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 HIST1H4GQ99525 98 aa8.12□□□□□ -1.11
VPS33B-204ENST00000554660 SPANXB1Q9NS25 103 aaPredicted RBP8.12□□□□□ -1.11
VPS33B-204ENST00000554660 NHP2Q9NX24 153 aaKnown RBP8.12□□□□□ -1.11
VPS33B-204ENST00000554660 ZNF688P0C7X2 276 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 COTL1Q14019 142 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 RRN3P1Q2M238 152 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 NFE4Q86UQ8 179 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 RAB37Q96AX2 223 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 ZNF479Q96JC4 524 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 PRADC1Q9BSG0 188 aa8.11□□□□□ -1.11
VPS33B-204ENST00000554660 IGHV1OR15-1A0A075B7D0 117 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 F6UB75 175 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 J3QR89 54 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 ZNF876PQ49A33 203 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 MORN3Q6PF18 240 aaPredicted RBP8.1□□□□□ -1.11
VPS33B-204ENST00000554660 TTTY13Q9BZ97 58 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 LRP1BQ9NZR2 4599 aa8.1□□□□□ -1.11
VPS33B-204ENST00000554660 IGLV4-69A0A075B6H9 119 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 SDHAF1A6NFY7 115 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 J3KRW8 73 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 CRYGDP07320 174 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 UBE2D1P51668 147 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 RNF151Q2KHN1 245 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 CSNK1G2-AS1Q8NCQ2 148 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 LINC00467Q9BRT7 94 aa8.09□□□□□ -1.11
VPS33B-204ENST00000554660 HERC1Q15751 4861 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 AGRNO00468 2067 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 ZNF815PA8K554 130 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 M0QY20 66 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 TSHBP01222 138 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 UBE2DNLQ8IWF7 75 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 MDFICQ9P1T7 246 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 PYGO1Q9Y3Y4 419 aa8.08□□□□□ -1.12
VPS33B-204ENST00000554660 APOBP04114 4563 aaKnown RBP8.07□□□□□ -1.12
VPS33B-204ENST00000554660 AMTNQ6UX39 209 aa8.07□□□□□ -1.12
VPS33B-204ENST00000554660 Q6ZR54 194 aa8.07□□□□□ -1.12
VPS33B-204ENST00000554660 CLUHP3Q96NS8 147 aa8.07□□□□□ -1.12
VPS33B-204ENST00000554660 TRAV12-3A0A0B4J271 114 aa8.06□□□□□ -1.12
VPS33B-204ENST00000554660 I3L3M4 83 aa8.06□□□□□ -1.12
VPS33B-204ENST00000554660 ATP6V0E2Q8NHE4 81 aa8.06□□□□□ -1.12
VPS33B-204ENST00000554660 XCL2Q9UBD3 114 aa8.06□□□□□ -1.12
VPS33B-204ENST00000554660 A0A0J9YY99 117 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 F5H697 171 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 K7ERJ3 54 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 LEPROTO15243 131 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 SCGB1A1P11684 91 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 EMP1P54849 157 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 DEFB1P60022 68 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 SCGB1D4Q6XE38 83 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 SLC25A29Q8N8R3 303 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 C20orf203Q8NBC4 194 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 PLEKHB2Q96CS7 222 aa8.05□□□□□ -1.12
VPS33B-204ENST00000554660 TRBV20-1A0A075B6N2 111 aa8.04□□□□□ -1.12
VPS33B-204ENST00000554660 A8MWV9 139 aa8.04□□□□□ -1.12
VPS33B-204ENST00000554660 C16orf90A8MZG2 172 aa8.04□□□□□ -1.12
VPS33B-204ENST00000554660 NAA38Q9BRA0 125 aaKnown RBP8.04□□□□□ -1.12
VPS33B-204ENST00000554660 PRO0461Q9UI25 63 aa8.04□□□□□ -1.12
VPS33B-204ENST00000554660 M0QXV9 152 aa8.03□□□□□ -1.12
VPS33B-204ENST00000554660 RHODO00212 210 aa8.03□□□□□ -1.12
VPS33B-204ENST00000554660 SRSF9Q13242 221 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS33B-204ENST00000554660 ZNF56Q15929 161 aa8.03□□□□□ -1.12
VPS33B-204ENST00000554660 GAGE13Q4V321 117 aa8.03□□□□□ -1.12
VPS33B-204ENST00000554660 C1orf134Q5TEV5 83 aa8.03□□□□□ -1.12
VPS33B-204ENST00000554660 A0A087WWL8 130 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 TMEM223A0PJW6 202 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 J3QQQ9 107 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 CDK2AP2O75956 126 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 SPART-AS1P0CW21 52 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 HTN3P15516 51 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 UBE2D3P61077 147 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 UBE2D2P62837 147 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 TNP2Q05952 138 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 DNAJC30Q96LL9 226 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 AMELXQ99217 191 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 C1QTNF4Q9BXJ3 329 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 VCX2Q9H322 139 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 DNAH5Q8TE73 4624 aa8.02□□□□□ -1.13
VPS33B-204ENST00000554660 IGHV3OR16-12A0A075B7B8 117 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 H3BMG7 143 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 H3BMM0 161 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 IGHV3-30P01768 117 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 IGHV3-30-5P0DP03 117 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 LGALS3P17931 250 aaKnown RBP8.01□□□□□ -1.13
VPS33B-204ENST00000554660 ZNF415Q09FC8 603 aa8.01□□□□□ -1.13
VPS33B-204ENST00000554660 SPINK13Q1W4C9 94 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms