RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 C18orf65Q6ZTR6 163 aa9□□□□□ -0.97
SHMT2-207ENST00000553837 TRAV12-2A0A075B6T6 113 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 TMEM89A2RUT3 159 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 K7EQG2 157 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 PRSS2P07478 247 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 AKAP9Q99996 3911 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 IGHV3-64A0A075B6Q5 118 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 RHOHQ15669 191 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 SORL1Q92673 2214 aa8.99□□□□□ -0.97
SHMT2-207ENST00000553837 NSUN5P1Q3KNT7 163 aa8.98□□□□□ -0.97
SHMT2-207ENST00000553837 NAV2Q8IVL1 2488 aa8.98□□□□□ -0.97
SHMT2-207ENST00000553837 A0A087WWL8 130 aa8.97□□□□□ -0.97
SHMT2-207ENST00000553837 LST1O00453 97 aa8.97□□□□□ -0.97
SHMT2-207ENST00000553837 HOXD3P31249 432 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-207ENST00000553837 CXCL5P42830 114 aa8.97□□□□□ -0.97
SHMT2-207ENST00000553837 HIST2H2BDQ6DRA6 164 aa8.97□□□□□ -0.97
SHMT2-207ENST00000553837 OPRPNQ99935 248 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-207ENST00000553837 DEFB136Q30KP8 78 aa8.97□□□□□ -0.97
SHMT2-207ENST00000553837 ZNF256Q9Y2P7 627 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-207ENST00000553837 APCP25054 2843 aa8.96□□□□□ -0.97
SHMT2-207ENST00000553837 TRACP01848 142 aa8.96□□□□□ -0.97
SHMT2-207ENST00000553837 LITAFQ99732 161 aa8.96□□□□□ -0.97
SHMT2-207ENST00000553837 IGHV3-16A0A0C4DH30 117 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 A0A0J9YXV3 536 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 IGHV3-30-3P0DP02 117 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 SPINK13Q1W4C9 94 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 LINC00643Q86TS7 51 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 DPH3Q96FX2 82 aa8.96□□□□□ -0.98
SHMT2-207ENST00000553837 KLK5Q9Y337 293 aaPredicted RBP8.96□□□□□ -0.98
SHMT2-207ENST00000553837 SLURP1P55000 103 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 DEFB113Q30KQ7 82 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 KRTAP1-3Q8IUG1 177 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 CLEC2BQ92478 149 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 UBE2E2Q96LR5 201 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 TIMM21Q9BVV7 248 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 ATOX1O00244 68 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 SNRPD3P62318 126 aaKnown RBP8.95□□□□□ -0.98
SHMT2-207ENST00000553837 RNF152Q8N8N0 203 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 C20orf203Q8NBC4 194 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 C9orf85Q96MD7 179 aa8.95□□□□□ -0.98
SHMT2-207ENST00000553837 PRRC2AP48634 2157 aaKnown RBP8.94□□□□□ -0.98
SHMT2-207ENST00000553837 I3L3M4 83 aa8.94□□□□□ -0.98
SHMT2-207ENST00000553837 MIAQ16674 131 aa8.94□□□□□ -0.98
SHMT2-207ENST00000553837 Q96MF0 132 aa8.94□□□□□ -0.98
SHMT2-207ENST00000553837 RBMY1A1P0DJD3 496 aaKnown RBP8.93□□□□□ -0.98
SHMT2-207ENST00000553837 RBMY1CP0DJD4 496 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 RBMY1FQ15415 496 aaKnown RBP8.93□□□□□ -0.98
SHMT2-207ENST00000553837 ADAMTSL4-AS1Q5T5F5 129 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 PRO0628Q9UI54 55 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 CREBBPQ92793 2442 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 CUBNO60494 3623 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 IGLV4-3A0A075B6K6 122 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 ADARB2-AS1A8MUL3 147 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 M0QY20 66 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 MALP21145 153 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 CEMP1Q6PRD7 247 aaPredicted RBP8.93□□□□□ -0.98
SHMT2-207ENST00000553837 C2orf48Q96LS8 159 aa8.93□□□□□ -0.98
SHMT2-207ENST00000553837 TENM4Q6N022 2769 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 TRAV8-3A0A0A6YYJ7 113 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 FAM74A4Q5TZK3 123 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 KNCNA6PVL3 124 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 Q5XG85 94 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 TMEM61Q8N0U2 210 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 NDUFA12Q9UI09 145 aa8.92□□□□□ -0.98
SHMT2-207ENST00000553837 GCN1Q92616 2671 aaKnown RBP8.91□□□□□ -0.98
SHMT2-207ENST00000553837 TLN2Q9Y4G6 2542 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 IGHV1OR15-1A0A075B7D0 117 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 IGHV1-58A0A0C4DH39 117 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 PRM2P04554 102 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 C5orf38Q86SI9 138 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 Q8N2B8 174 aa8.91□□□□□ -0.98
SHMT2-207ENST00000553837 MRPS36P82909 103 aaKnown RBP8.9□□□□□ -0.98
SHMT2-207ENST00000553837 C4orf26Q17RF5 130 aa8.9□□□□□ -0.98
SHMT2-207ENST00000553837 HRCT1Q6UXD1 115 aa8.9□□□□□ -0.98
SHMT2-207ENST00000553837 MYO9AB2RTY4 2548 aa8.9□□□□□ -0.98
SHMT2-207ENST00000553837 ITPR3Q14573 2671 aa8.9□□□□□ -0.98
SHMT2-207ENST00000553837 HIST1H4AP62805 103 aaKnown RBP8.9□□□□□ -0.98
SHMT2-207ENST00000553837 PYGO1Q9Y3Y4 419 aa8.9□□□□□ -0.98
SHMT2-207ENST00000553837 RBMY1BA6NDE4 496 aaKnown RBP8.89□□□□□ -0.99
SHMT2-207ENST00000553837 RBMY1EA6NEQ0 496 aaKnown RBP8.89□□□□□ -0.99
SHMT2-207ENST00000553837 TIMM17BO60830 172 aa8.89□□□□□ -0.99
SHMT2-207ENST00000553837 RBMY1DP0C7P1 496 aaKnown RBP8.89□□□□□ -0.99
SHMT2-207ENST00000553837 SDIM1Q6ZPB5 146 aa8.89□□□□□ -0.99
SHMT2-207ENST00000553837 Q6ZSV7 163 aa8.89□□□□□ -0.99
SHMT2-207ENST00000553837 DEFB131AP59861 70 aa8.89□□□□□ -0.99
SHMT2-207ENST00000553837 HELZ2Q9BYK8 2649 aaKnown RBP8.89□□□□□ -0.99
SHMT2-207ENST00000553837 CD28P10747 220 aa8.88□□□□□ -0.99
SHMT2-207ENST00000553837 NPC2P61916 151 aa8.88□□□□□ -0.99
SHMT2-207ENST00000553837 HIST2H2BCQ6DN03 193 aa8.88□□□□□ -0.99
SHMT2-207ENST00000553837 VSIG2Q96IQ7 327 aa8.88□□□□□ -0.99
SHMT2-207ENST00000553837 NF1P21359 2839 aa8.88□□□□□ -0.99
SHMT2-207ENST00000553837 SONP18583 2426 aaKnown RBP8.88□□□□□ -0.99
SHMT2-207ENST00000553837 hADV29S1A0JD25 119 aa8.87□□□□□ -0.99
SHMT2-207ENST00000553837 FASNP49327 2511 aaKnown RBP8.87□□□□□ -0.99
SHMT2-207ENST00000553837 TINCRA0A1B0GVN0 87 aa8.86□□□□□ -0.99
SHMT2-207ENST00000553837 HTN1P15515 57 aa8.86□□□□□ -0.99
SHMT2-207ENST00000553837 WFDC11Q8NEX6 87 aa8.86□□□□□ -0.99
SHMT2-207ENST00000553837 SMCR5Q8TEV8 140 aa8.86□□□□□ -0.99
SHMT2-207ENST00000553837 TRAV13-1A0A0B4J241 112 aa8.86□□□□□ -0.99
SHMT2-207ENST00000553837 PEMTQ9UBM1 199 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms