RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 OCIAD2Q56VL3 154 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 SLC25A29Q8N8R3 303 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 TMEM141Q96I45 108 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 CITED1Q99966 193 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 K7EP34 96 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 MUSTN1Q8IVN3 82 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 TIMM21Q9BVV7 248 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 CDKN2A-AS1Q9UH64 79 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 BAHCC1Q9P281 2608 aa4.03□□□□□ -1.76
LIMA1-215ENST00000552823 TRBV7-9A0A0J9YWB2 115 aa4.03□□□□□ -1.77
LIMA1-215ENST00000552823 UBE2L6O14933 153 aa4.03□□□□□ -1.77
LIMA1-215ENST00000552823 RPL36AP83881 106 aaKnown RBP4.03□□□□□ -1.77
LIMA1-215ENST00000552823 RPL36ALQ969Q0 106 aaKnown RBP4.03□□□□□ -1.77
LIMA1-215ENST00000552823 TEX48A0A1B0GUV7 120 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 RHODO00212 210 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 SIVA1O15304 175 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 NXPH4O95158 308 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 COX6A2Q02221 97 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 MEIG1Q5JSS6 88 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 C11orf72Q8NBR9 251 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 IGHV3-30-3P0DP02 117 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 C5orf38Q86SI9 138 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 NDUFA12Q9UI09 145 aa4.02□□□□□ -1.77
LIMA1-215ENST00000552823 TRBV7-3A0A075B6L6 115 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 A0A1B0GV72 72 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 INSL3P51460 131 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 Q8N2B8 174 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 RNF152Q8N8N0 203 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 TIMM17AQ99595 171 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 KRTAP3-3Q9BYR6 98 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 KRTAP3-2Q9BYR7 98 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 PKD1L1Q8TDX9 2849 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 KMT2BQ9UMN6 2715 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-215ENST00000552823 IGLV10-54A0A075B6I4 117 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 LINC01546A6NGU7 62 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 PRB2P02812 416 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-215ENST00000552823 ODF3Q96PU9 254 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 CHCHD7Q9BUK0 85 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 TRBV6-5A0A0K0K1A5 114 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 RNASE1P07998 156 aaKnown RBP4.01□□□□□ -1.77
LIMA1-215ENST00000552823 HILS1P60008 231 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 RHOHQ15669 191 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 C10orf126Q8N4M7 172 aa4.01□□□□□ -1.77
LIMA1-215ENST00000552823 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-215ENST00000552823 K7ERU9 68 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 EIF4EBP3O60516 100 aaPredicted RBP4□□□□□ -1.77
LIMA1-215ENST00000552823 ADAMTSL4-AS1Q5T5F5 129 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 NFE4Q86UQ8 179 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 TM2D2Q9BX73 214 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 HIGD1BQ9P298 99 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 GIG44P09565 113 aaPredicted RBP4□□□□□ -1.77
LIMA1-215ENST00000552823 RBX1P62877 108 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 PAPPA-AS1Q5QFB9 102 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 NTM-AS1Q6ZSK4 140 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 OR5A1Q8NGJ0 315 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 GTSF1LQ9H1H1 148 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 Q9H8V8 135 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 TENM3Q9P273 2699 aa4□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM223A0PJW6 202 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 K7EQD1 137 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 TSPAN13O95857 204 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 PFN2P35080 140 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 SHISA2Q6UWI4 295 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 Q8N3U1 123 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM86BQ8N661 226 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 FAM110AQ9BQ89 295 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 UBE2D4Q9Y2X8 147 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 A0A0J9YXY3 114 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 RS1O15537 224 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 CFC1BP0CG36 223 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 CFC1P0CG37 223 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 GYPEP15421 78 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 LINC00526Q96FQ7 95 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 IGLV1-51P01701 117 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 XCL1P47992 114 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 FHL3Q13643 280 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 PRIMA1Q86XR5 153 aa3.99□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM263Q8WUH6 116 aaKnown RBP3.99□□□□□ -1.77
LIMA1-215ENST00000552823 IGLV4-60A0A075B6I1 120 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 C9JAW5 83 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 F5H768 121 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 LEPROTO15243 131 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 UFSP1Q6NVU6 142 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 NDUFA11Q86Y39 141 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 TEX29Q8N6K0 151 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 ERG28Q9UKR5 140 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 IGHV3-30P01768 117 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 IGHV3-30-5P0DP03 117 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 SMAGPQ0VAQ4 97 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 FAM222AQ5U5X8 452 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 FAM104AQ969W3 186 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM101Q96IK0 257 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 TMEM243Q9BU79 118 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 RETNQ9HD89 108 aa3.98□□□□□ -1.77
LIMA1-215ENST00000552823 TCL1BO95988 128 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 PIK3CD-AS1Q5SR53 167 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 CLEC2BQ92478 149 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 PRO1854Q9UHT4 67 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 DNAJC30Q96LL9 226 aa3.97□□□□□ -1.77
LIMA1-215ENST00000552823 TRAV25A0A0B4J276 109 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms