RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 DEFB104AQ8WTQ1 72 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 C4orf3Q8WVX3 66 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 COPS9Q8WXC6 57 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 FAM104AQ969W3 186 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 VSIG2Q96IQ7 327 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 CARD19Q96LW7 228 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 LINC01587Q99440 93 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 CHCHD7Q9BUK0 85 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 NDUFA12Q9UI09 145 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 UBE2D4Q9Y2X8 147 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-45A0A087WSX0 123 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-52A0A0A0MRZ9 124 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1BA6NDE4 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1EA6NEQ0 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 COX6CP09669 75 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1DP0C7P1 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV4-31P0DP07 118 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 CIRBPQ14011 172 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 MIAQ16674 131 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DEFB114Q30KQ6 69 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 ZFAND6Q6FIF0 208 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 SFTA2Q6UW10 78 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 FAM19A3Q7Z5A8 133 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 ANKRD29Q8N6D5 301 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 C11orf72Q8NBR9 251 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DYNLRB2Q8TF09 96 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 LITAFQ99732 161 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 GEMIN7Q9H840 131 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DCHS1Q96JQ0 3298 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV3-73A0A0B4J1V6 119 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TRBV10-1A0A0K0K1A3 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TRBV10-2A0A0K0K1G8 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 C9JAW5 83 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 SPINK8P0C7L1 97 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 HTN1P15515 57 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 RPL13AP40429 203 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 Q1RN00 199 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 LINC01620Q4KN68 170 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TMEM61Q8N0U2 210 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 PPDPFQ9H3Y8 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 CSDC2Q9Y534 153 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 CEP295Q9C0D2 2601 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 ATRXP46100 2492 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 AKAP6Q13023 2319 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 SPTAN1Q13813 2472 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-37A0A075B6J1 123 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV3-64A0A075B6Q5 118 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 H3BT86 120 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 NDUFA1O15239 70 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 CKS1BP61024 79 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 HERVK_113P63121 156 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ2Q13117 558 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 Q6ZUT4 128 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 Q75L30 129 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ4Q86SG3 579 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ3Q9NR90 486 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.29□□□□□ -1.723e-10■□□□□ 8.6
CHMP4A-210ENST00000552620 IGF2RP11717 2491 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 TRAV8-3A0A0A6YYJ7 113 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 H7C2G1 150 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 RPL36AP83881 106 aaKnown RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 MRPL23Q16540 153 aaKnown RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 DEFB113Q30KQ7 82 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 ADAMTSL4-AS1Q5T5F5 129 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 CEMP1Q6PRD7 247 aaPredicted RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 NRGNQ92686 78 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 TMEM101Q96IK0 257 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 ICOSQ9Y6W8 199 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 TRAV4A0A0B4J268 109 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 IGKV2-29A2NJV5 120 aaPredicted RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 F8WDY8 70 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 H7C423 109 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 MT-ATP8P03928 68 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 XGP55808 180 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 HERV-K104P63124 156 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DEFB136Q30KP8 78 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DEFB121Q5J5C9 76 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 C2orf82Q6UX34 121 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 C18orf65Q6ZTR6 163 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 STHQ8IWL8 128 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 MAPK1IP1LQ8NDC0 245 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 CITED1Q99966 193 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 PRRC2AP48634 2157 aaKnown RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DOPEY2Q9Y3R5 2298 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 TRAV8-4A0A0B4J246 113 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 K7EQD1 137 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 LST1O00453 97 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 RNASE13Q5GAN3 156 aaKnown RBP4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 LINC00242Q5T6M2 205 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 Q6Q795 121 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 C1orf158Q8N1D5 194 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 CDKN2A-AS1Q9UH64 79 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 CSMD1Q96PZ7 3565 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 ASH1LQ9NR48 2969 aaKnown RBP4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 IGHV3OR16-12A0A075B7B8 117 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 TRGV1A0A0A0MS02 117 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 IGHV3-38A0A0C4DH36 116 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 FAM240AA0A1B0GVK7 77 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 PRM2P04554 102 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms