RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TENM2Q9NT68 2774 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 MYH1P12882 1939 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 FOCADQ5VW36 1801 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 ANK3Q12955 4377 aaKnown RBP2.01□□□□□ -2.09
LIMA1-210ENST00000552045 ARL14EPLP0DKL9 152 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 CKS1BP61024 79 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 MPC1Q9Y5U8 109 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 CNTRLQ7Z7A1 2325 aa2.01□□□□□ -2.09
LIMA1-210ENST00000552045 PLIN4Q96Q06 1357 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 LCE6AA0A183 80 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 JMJD7-PLA2G4BH0Y9G9 81 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 DEFB133Q30KQ1 61 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 PLPP5Q8NEB5 264 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 FDCSPQ8NFU4 85 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 AP1S3Q96PC3 154 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 HSPB8Q9UJY1 196 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 C22orf24Q9Y442 160 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 KIAA1549LQ6ZVL6 1849 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 ABCA13Q86UQ4 5058 aa2□□□□□ -2.09
LIMA1-210ENST00000552045 NCOA6Q14686 2063 aaPredicted RBP2□□□□□ -2.09
LIMA1-210ENST00000552045 AKAP6Q13023 2319 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 LOC107984156A0A0G2JMH3 177 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 ETV6P41212 452 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 NEDD8Q15843 81 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 ARL17AQ8IVW1 177 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 PTPRDP23468 1912 aa1.99□□□□□ -2.09
LIMA1-210ENST00000552045 MUC4Q99102 2169 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 QRFPP83859 136 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 SMCO1Q147U7 214 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 Q6ZS92 163 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 OR4S1Q8NGB4 309 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 WFDC10AQ9H1F0 79 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 SACSQ9NZJ4 4579 aa1.98□□□□□ -2.09
LIMA1-210ENST00000552045 IZUMO2Q6UXV1 221 aa1.97□□□□□ -2.09
LIMA1-210ENST00000552045 LINC00299Q6ZSB3 139 aa1.97□□□□□ -2.09
LIMA1-210ENST00000552045 C5orf17Q8NAS9 161 aa1.97□□□□□ -2.09
LIMA1-210ENST00000552045 MAGOHBQ96A72 148 aaKnown RBP1.97□□□□□ -2.09
LIMA1-210ENST00000552045 BANF2Q9H503 90 aa1.97□□□□□ -2.09
LIMA1-210ENST00000552045 DYNC2H1Q8NCM8 4307 aaKnown RBP1.97□□□□□ -2.09
LIMA1-210ENST00000552045 COL7A1Q02388 2944 aa1.97□□□□□ -2.09
LIMA1-210ENST00000552045 DNAH1Q9P2D7 4330 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 ZNF727A8MUV8 499 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 KRTAP5-8O75690 187 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 HIST1H1BP16401 226 aaKnown RBP1.96□□□□□ -2.1
LIMA1-210ENST00000552045 CKS2P33552 79 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 ASB16-AS1Q495Z4 193 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 CCSMST1Q4G0I0 132 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 C6orf52Q5T4I8 152 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 OTOSQ8NHW6 89 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 ANK1P16157 1881 aa1.96□□□□□ -2.1
LIMA1-210ENST00000552045 EDF1O60869 148 aaKnown RBP1.95□□□□□ -2.1
LIMA1-210ENST00000552045 SMIM24O75264 130 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 CD14P08571 375 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 PRB4P10163 310 aaPredicted RBP1.95□□□□□ -2.1
LIMA1-210ENST00000552045 HMGA1P17096 107 aaKnown RBP1.95□□□□□ -2.1
LIMA1-210ENST00000552045 DNAJB13P59910 316 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 ARPC4P59998 168 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 PCBD1P61457 104 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 SNRPD3P62318 126 aaKnown RBP1.95□□□□□ -2.1
LIMA1-210ENST00000552045 TMEM91Q6ZNR0 172 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 CCL19Q99731 98 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 LIMD2Q9BT23 127 aa1.95□□□□□ -2.1
LIMA1-210ENST00000552045 METTL1Q9UBP6 276 aaKnown RBP1.95□□□□□ -2.1
LIMA1-210ENST00000552045 STAB2Q8WWQ8 2551 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 A0A0J9YY99 117 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 IFITM5A6NNB3 132 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 IGLV3-1P01715 115 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 STATHP02808 62 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 KRTAP10-4P60372 401 aaPredicted RBP1.94□□□□□ -2.1
LIMA1-210ENST00000552045 TFF3Q07654 80 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 SMIM7Q9BQ49 75 aa1.94□□□□□ -2.1
LIMA1-210ENST00000552045 FLG2Q5D862 2391 aaPredicted RBP1.93□□□□□ -2.1
LIMA1-210ENST00000552045 TRAV23DV6A0A075B6W5 121 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 SPTY2D1-AS1A0A0U1RR47 76 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 PNMA8CA0A1B0GUJ8 204 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 BBIP1A8MTZ0 92 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 AKR1D1P51857 326 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 HIST1H1AQ02539 215 aaPredicted RBP1.93□□□□□ -2.1
LIMA1-210ENST00000552045 SPATA45Q537H7 98 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 AMELYQ99218 206 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 LPAR5Q9H1C0 372 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 MYH8P13535 1937 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 MYO7BQ6PIF6 2116 aa1.93□□□□□ -2.1
LIMA1-210ENST00000552045 MUC2Q02817 5179 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 IGHV1-24A0A0C4DH33 117 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 SULT1C4O75897 302 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 HLA-DRB4P13762 266 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 SMIM21Q3B7S5 101 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 TCTEX1D1Q8N7M0 179 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 DNAJC15Q9Y5T4 150 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 HLA-DRB4X5D2U9 266 aa1.92□□□□□ -2.1
LIMA1-210ENST00000552045 USF3Q68DE3 2245 aa1.91□□□□□ -2.1
LIMA1-210ENST00000552045 CD3DP04234 171 aa1.91□□□□□ -2.1
LIMA1-210ENST00000552045 S100A12P80511 92 aa1.91□□□□□ -2.1
LIMA1-210ENST00000552045 C10orf111Q8N326 155 aa1.91□□□□□ -2.1
LIMA1-210ENST00000552045 MYH4Q9Y623 1939 aa1.91□□□□□ -2.1
LIMA1-210ENST00000552045 TRAV17A0A0B4J275 112 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 A0A1W2PPB8 328 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 A0A1W2PRS3 328 aa1.9□□□□□ -2.11
LIMA1-210ENST00000552045 KIR3DP1A8MWS1 328 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms