RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SRSF9Q13242 221 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS33A-209ENST00000544349 MTURNQ8N3F0 131 aa10.2□□□□□ -0.78
VPS33A-209ENST00000544349 UBE2D1P51668 147 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 PGPEP1Q9NXJ5 209 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 SMIM9A6NGZ8 99 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 H3BMG7 143 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 IGHV4-30-4P0DP06 118 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 KRTAP10-11P60412 298 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 TNFRSF18Q9Y5U5 241 aa10.19□□□□□ -0.78
VPS33A-209ENST00000544349 GAGE7O76087 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 GAGE12FP0CL80 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 GAGE12GP0CL81 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 GAGE12IP0CL82 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 EGFEM1PQ0D2K5 195 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 DNAJC30Q96LL9 226 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 CHCHD7Q9BUK0 85 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 IGHV3-38A0A0C4DH36 116 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 IGHV3-30P01768 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 IGHV3-30-5P0DP03 117 aa10.18□□□□□ -0.78
VPS33A-209ENST00000544349 LGALS3P17931 250 aaKnown RBP10.18□□□□□ -0.78
VPS33A-209ENST00000544349 TEX48A0A1B0GUV7 120 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 G3V4G9 280 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 LEPROTO15243 131 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 TSPAN13O95857 204 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 DEFB135Q30KP9 77 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 SFTA2Q6UW10 78 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 VCX2Q9H322 139 aa10.17□□□□□ -0.78
VPS33A-209ENST00000544349 SPANXB1Q9NS25 103 aaPredicted RBP10.17□□□□□ -0.78
VPS33A-209ENST00000544349 TRGV2A0A075B6R0 118 aa10.16□□□□□ -0.78
VPS33A-209ENST00000544349 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.16□□□□□ -0.78
VPS33A-209ENST00000544349 IGKV2-29A2NJV5 120 aaPredicted RBP10.16□□□□□ -0.78
VPS33A-209ENST00000544349 APOMO95445 188 aa10.16□□□□□ -0.78
VPS33A-209ENST00000544349 WFDC2Q14508 124 aa10.16□□□□□ -0.78
VPS33A-209ENST00000544349 SLC25A29Q8N8R3 303 aa10.16□□□□□ -0.78
VPS33A-209ENST00000544349 CIDEAO60543 219 aa10.16□□□□□ -0.78
VPS33A-209ENST00000544349 TMEM238LA0A1B0GVL6 79 aa10.15□□□□□ -0.78
VPS33A-209ENST00000544349 A6NJY4 79 aa10.15□□□□□ -0.78
VPS33A-209ENST00000544349 PRO0461Q9UI25 63 aa10.15□□□□□ -0.78
VPS33A-209ENST00000544349 PYGO1Q9Y3Y4 419 aa10.15□□□□□ -0.78
VPS33A-209ENST00000544349 RPL24P83731 157 aaKnown RBP10.15□□□□□ -0.79
VPS33A-209ENST00000544349 Q6ZUT4 128 aa10.15□□□□□ -0.79
VPS33A-209ENST00000544349 C10orf126Q8N4M7 172 aa10.15□□□□□ -0.79
VPS33A-209ENST00000544349 UBE2D4Q9Y2X8 147 aa10.15□□□□□ -0.79
VPS33A-209ENST00000544349 K7EQD1 137 aa10.14□□□□□ -0.79
VPS33A-209ENST00000544349 EIF4EBP3O60516 100 aaPredicted RBP10.14□□□□□ -0.79
VPS33A-209ENST00000544349 LINC00612Q8N6U2 182 aa10.14□□□□□ -0.79
VPS33A-209ENST00000544349 TRAV8-3A0A0A6YYJ7 113 aa10.13□□□□□ -0.79
VPS33A-209ENST00000544349 TRBV10-1A0A0K0K1A3 114 aa10.13□□□□□ -0.79
VPS33A-209ENST00000544349 CFC1BP0CG36 223 aa10.13□□□□□ -0.79
VPS33A-209ENST00000544349 CFC1P0CG37 223 aa10.13□□□□□ -0.79
VPS33A-209ENST00000544349 MRPS36P82909 103 aaKnown RBP10.13□□□□□ -0.79
VPS33A-209ENST00000544349 STAB1Q9NY15 2570 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 A8MZ25 164 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 RNF183Q96D59 192 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 IGHV3-30-3P0DP02 117 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 DEFB130BP0DP73 79 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 DEFB130AP0DP74 79 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 SH2D6Q7Z4S9 175 aa10.12□□□□□ -0.79
VPS33A-209ENST00000544349 F8W1H4 67 aa10.11□□□□□ -0.79
VPS33A-209ENST00000544349 RPL36AP83881 106 aaKnown RBP10.11□□□□□ -0.79
VPS33A-209ENST00000544349 FHL2Q14192 279 aa10.11□□□□□ -0.79
VPS33A-209ENST00000544349 RPL36ALQ969Q0 106 aaKnown RBP10.11□□□□□ -0.79
VPS33A-209ENST00000544349 TRGV4A0A0C4DH28 118 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 IGHV4-28A0A0C4DH34 117 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 TRBV6-4A0A1B0GX49 114 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 UBE2D3P61077 147 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 UBE2D2P62837 147 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 ETDBQ3ZM63 59 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 TIMM21Q9BVV7 248 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 SPANXA1Q9NS26 97 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 LOC107984156A0A0G2JMH3 177 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 A0A0J9YXY3 114 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 LYRM9A8MSI8 78 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 MIFP14174 115 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 GAGE13Q4V321 117 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 ARL17AQ8IVW1 177 aa10.1□□□□□ -0.79
VPS33A-209ENST00000544349 A4D1N5 150 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 SPINK8P0C7L1 97 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 COTL1Q14019 142 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 FAM222AQ5U5X8 452 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 Q8NAQ8 132 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 DEFB4AO15263 64 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 SMCPP49901 116 aaPredicted RBP10.09□□□□□ -0.79
VPS33A-209ENST00000544349 LITAFQ99732 161 aa10.09□□□□□ -0.79
VPS33A-209ENST00000544349 GAGE12JA6NER3 117 aa10.08□□□□□ -0.8
VPS33A-209ENST00000544349 CRYBA4P53673 196 aa10.08□□□□□ -0.8
VPS33A-209ENST00000544349 GAGE4Q13068 117 aa10.08□□□□□ -0.8
VPS33A-209ENST00000544349 GAGE5Q13069 117 aa10.08□□□□□ -0.8
VPS33A-209ENST00000544349 TINCRA0A1B0GVN0 87 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 PSMB2P49721 201 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 DAZ4Q86SG3 579 aaKnown RBP10.07□□□□□ -0.8
VPS33A-209ENST00000544349 MUSTN1Q8IVN3 82 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 DAZ3Q9NR90 486 aaKnown RBP10.07□□□□□ -0.8
VPS33A-209ENST00000544349 CMYA5Q8N3K9 4069 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 IGHV1-58A0A0C4DH39 117 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 LINC00694P0DN24 101 aa10.07□□□□□ -0.8
VPS33A-209ENST00000544349 LOC100131303A0A0U1RQF7 123 aa10.06□□□□□ -0.8
VPS33A-209ENST00000544349 TCL1BO95988 128 aa10.06□□□□□ -0.8
VPS33A-209ENST00000544349 TMEM238C9JI98 176 aa10.06□□□□□ -0.8
VPS33A-209ENST00000544349 VSIG2Q96IQ7 327 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms