RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SERP2Q8N6R1 65 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 C2orf16Q68DN1 1984 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 M0QY20 66 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 WFDC2Q14508 124 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 REG3GQ6UW15 175 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 C20orf173Q96LM9 149 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 NAV2Q8IVL1 2488 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 LST1O00453 97 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 UBE2D3P61077 147 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 REG3AQ06141 175 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 APRG1Q8IVJ8 170 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 LRP4O75096 1905 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 IGLV2-11P01706 119 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 FRMD6-AS1P0C7T7 363 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 RPL39P62891 51 aaKnown RBP5.82□□□□□ -1.48
VPS13D-211ENST00000543710 CLEC2BQ92478 149 aa5.82□□□□□ -1.48
VPS13D-211ENST00000543710 Q8IZM0 81 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 KLLNB2CW77 178 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 C5orf38Q86SI9 138 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 A0A1B0GW54 56 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 C2CD3Q4AC94 2353 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 LRRK2Q5S007 2527 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 ZNF407Q9C0G0 2248 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 RNASE13Q5GAN3 156 aaKnown RBP5.81□□□□□ -1.48
VPS13D-211ENST00000543710 GDF5OSQ5U4N7 250 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 NRACQ8N912 160 aa5.81□□□□□ -1.48
VPS13D-211ENST00000543710 RNASE8Q8TDE3 154 aaKnown RBP5.81□□□□□ -1.48
VPS13D-211ENST00000543710 SDK2Q58EX2 2172 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 TRBV6-8A0A0A6YYG3 113 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 H3BS24 57 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 K7ERS5 55 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 IGLV1-40P01703 118 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 IGHV4-30-4P0DP06 118 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 DEFB114Q30KQ6 69 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 CD164L2Q6UWJ8 174 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 MSRB1Q9NZV6 116 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 DOCK8Q8NF50 2099 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 CACNA1DQ01668 2161 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 DOCK10Q96BY6 2186 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 DOCK7Q96N67 2140 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 DEFB105AQ8NG35 78 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 LOC107984640A0A0U1RRK4 108 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 TSHBP01222 138 aa5.8□□□□□ -1.48
VPS13D-211ENST00000543710 CSDC2Q9Y534 153 aaKnown RBP5.8□□□□□ -1.48
VPS13D-211ENST00000543710 IGKV2D-26A0A0A0MRZ7 120 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 IGKV3D-7A0A0C4DH55 119 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 DEFB4AO15263 64 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 CCKP06307 115 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 COX7CP15954 63 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 BRWD1-AS2P59051 145 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 LELP1Q5T871 98 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 CHCHD10Q8WYQ3 142 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-211ENST00000543710 KIF26BQ2KJY2 2108 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 A0A0J9YWU9 116 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 EDN2P20800 178 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 SERP1Q9Y6X1 66 aa5.79□□□□□ -1.48
VPS13D-211ENST00000543710 MDC1Q14676 2089 aaKnown RBP5.79□□□□□ -1.48
VPS13D-211ENST00000543710 A0A087WZ39 114 aa5.78□□□□□ -1.48
VPS13D-211ENST00000543710 IGLV4-69A0A075B6H9 119 aa5.78□□□□□ -1.48
VPS13D-211ENST00000543710 ZNF80P51504 273 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-211ENST00000543710 ASPHD1Q5U4P2 390 aa5.78□□□□□ -1.48
VPS13D-211ENST00000543710 CEMP1Q6PRD7 247 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-211ENST00000543710 ALPK3Q96L96 1907 aa5.78□□□□□ -1.48
VPS13D-211ENST00000543710 UBE2D2P62837 147 aa5.78□□□□□ -1.48
VPS13D-211ENST00000543710 TRIAP1O43715 76 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 CLPSL2Q6UWE3 100 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 DEFB104AQ8WTQ1 72 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 PPDPFQ9H3Y8 114 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 TRBV10-3A0A0K0K1G6 114 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 C14orf132Q9NPU4 83 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 C2orf91Q6ZV80 131 aa5.77□□□□□ -1.49
VPS13D-211ENST00000543710 TRAV7A0A075B6U4 112 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 MDFIQ99750 246 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 TP53TG3Q9ULZ0 132 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 ABCA1O95477 2261 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 ATG2AQ2TAZ0 1938 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 E7EUB6 86 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 RPL28P46779 137 aaKnown RBP5.76□□□□□ -1.49
VPS13D-211ENST00000543710 POLR2KP53803 58 aaKnown RBP5.76□□□□□ -1.49
VPS13D-211ENST00000543710 ZNF702PQ9H963 129 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 ESM1Q9NQ30 184 aa5.76□□□□□ -1.49
VPS13D-211ENST00000543710 IGKV2-24A0A0C4DH68 120 aa5.75□□□□□ -1.49
VPS13D-211ENST00000543710 GTF3C1Q12789 2109 aa5.75□□□□□ -1.49
VPS13D-211ENST00000543710 UNQ9165/PRO28630Q6UXU0 137 aa5.75□□□□□ -1.49
VPS13D-211ENST00000543710 SNRNP200O75643 2136 aaKnown RBP5.75□□□□□ -1.49
VPS13D-211ENST00000543710 POM121L12Q8N7R1 296 aa5.75□□□□□ -1.49
VPS13D-211ENST00000543710 MYO18BQ8IUG5 2567 aa5.75□□□□□ -1.49
VPS13D-211ENST00000543710 HEATR1Q9H583 2144 aaKnown RBP5.75□□□□□ -1.49
VPS13D-211ENST00000543710 CRIP1P50238 77 aa5.74□□□□□ -1.49
VPS13D-211ENST00000543710 MRPS12O15235 138 aaKnown RBP5.74□□□□□ -1.49
VPS13D-211ENST00000543710 Q6ZPA2 131 aa5.74□□□□□ -1.49
VPS13D-211ENST00000543710 KLK12Q9UKR0 248 aa5.74□□□□□ -1.49
VPS13D-211ENST00000543710 FASNP49327 2511 aaKnown RBP5.74□□□□□ -1.49
VPS13D-211ENST00000543710 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.74□□□□□ -1.49
VPS13D-211ENST00000543710 IGHV4-28A0A0C4DH34 117 aa5.74□□□□□ -1.49
VPS13D-211ENST00000543710 PRYO14603 147 aa5.74□□□□□ -1.49
VPS13D-211ENST00000543710 SMIM26A0A096LP01 95 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 TRBV7-6A0A0J9YX20 115 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 MT-ATP8P03928 68 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 USP17L23D6RBM5 183 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms