RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 ICOSQ9Y6W8 199 aa11.19□□□□□ -0.62
CNOT9-208ENST00000542068 C15orf53Q8NAA6 179 aa11.18□□□□□ -0.62
CNOT9-208ENST00000542068 LINC00467Q9BRT7 94 aa11.18□□□□□ -0.62
CNOT9-208ENST00000542068 TRGV11A0A075B6L2 103 aa11.17□□□□□ -0.62
CNOT9-208ENST00000542068 H3BMM0 161 aa11.17□□□□□ -0.62
CNOT9-208ENST00000542068 RPL13AP40429 203 aaKnown RBP11.17□□□□□ -0.62
CNOT9-208ENST00000542068 UBE2WQ96B02 151 aa11.17□□□□□ -0.62
CNOT9-208ENST00000542068 GCN1Q92616 2671 aaKnown RBP11.17□□□□□ -0.62
CNOT9-208ENST00000542068 NDUFA7O95182 113 aa11.17□□□□□ -0.62
CNOT9-208ENST00000542068 C3orf56Q8N813 242 aa11.17□□□□□ -0.62
CNOT9-208ENST00000542068 Q6YL49 198 aa11.16□□□□□ -0.62
CNOT9-208ENST00000542068 WFDC11Q8NEX6 87 aa11.16□□□□□ -0.62
CNOT9-208ENST00000542068 CDKN2A-AS1Q9UH64 79 aa11.16□□□□□ -0.62
CNOT9-208ENST00000542068 IGHV1-58A0A0C4DH39 117 aa11.16□□□□□ -0.62
CNOT9-208ENST00000542068 DEFB113Q30KQ7 82 aa11.15□□□□□ -0.62
CNOT9-208ENST00000542068 FAM104AQ969W3 186 aa11.15□□□□□ -0.62
CNOT9-208ENST00000542068 COX6CP09669 75 aa11.15□□□□□ -0.62
CNOT9-208ENST00000542068 LITAFQ99732 161 aa11.15□□□□□ -0.62
CNOT9-208ENST00000542068 TRBV10-2A0A0K0K1G8 114 aa11.15□□□□□ -0.63
CNOT9-208ENST00000542068 H7C423 109 aa11.15□□□□□ -0.63
CNOT9-208ENST00000542068 TRAV13-1A0A0B4J241 112 aa11.14□□□□□ -0.63
CNOT9-208ENST00000542068 ZNF843Q8N446 348 aa11.14□□□□□ -0.63
CNOT9-208ENST00000542068 J3QLI3 93 aa11.13□□□□□ -0.63
CNOT9-208ENST00000542068 VSIG2Q96IQ7 327 aa11.13□□□□□ -0.63
CNOT9-208ENST00000542068 IGKV3OR2-268A0A0C4DH90 116 aa11.13□□□□□ -0.63
CNOT9-208ENST00000542068 RBMY1BA6NDE4 496 aaKnown RBP11.13□□□□□ -0.63
CNOT9-208ENST00000542068 RBMY1EA6NEQ0 496 aaKnown RBP11.13□□□□□ -0.63
CNOT9-208ENST00000542068 CCDC179H3BU77 68 aa11.13□□□□□ -0.63
CNOT9-208ENST00000542068 RBMY1DP0C7P1 496 aaKnown RBP11.13□□□□□ -0.63
CNOT9-208ENST00000542068 PEMTQ9UBM1 199 aa11.13□□□□□ -0.63
CNOT9-208ENST00000542068 SETXQ7Z333 2677 aaKnown RBP11.13□□□□□ -0.63
CNOT9-208ENST00000542068 TRGV1A0A0A0MS02 117 aa11.12□□□□□ -0.63
CNOT9-208ENST00000542068 MRPS36P82909 103 aaKnown RBP11.12□□□□□ -0.63
CNOT9-208ENST00000542068 ZNF469Q96JG9 3925 aaPredicted RBP11.12□□□□□ -0.63
CNOT9-208ENST00000542068 NBPF19A0A087WUL8 3843 aa11.12□□□□□ -0.63
CNOT9-208ENST00000542068 NDUFV3P56181 108 aaKnown RBP11.11□□□□□ -0.63
CNOT9-208ENST00000542068 MIAQ16674 131 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 ODF3Q96PU9 254 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 CHCHD7Q9BUK0 85 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 TRBV30A0A0K0K1B3 111 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 COX6A2Q02221 97 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 STHQ8IWL8 128 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.11□□□□□ -0.63
CNOT9-208ENST00000542068 CITED1Q99966 193 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 Q9H8V8 135 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 UBE2D4Q9Y2X8 147 aa11.11□□□□□ -0.63
CNOT9-208ENST00000542068 NHLRC4P0CG21 123 aaPredicted RBP11.11□□□□□ -0.63
CNOT9-208ENST00000542068 BRI3O95415 125 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 RPL35AP18077 110 aaKnown RBP11.1□□□□□ -0.63
CNOT9-208ENST00000542068 GAGE5Q13069 117 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 GAGE6Q13070 117 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 MEIG1Q5JSS6 88 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 IFITM1P13164 125 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 YAE1D1Q9NRH1 226 aa11.1□□□□□ -0.63
CNOT9-208ENST00000542068 MAP6D1Q9H9H5 199 aa11.09□□□□□ -0.63
CNOT9-208ENST00000542068 TMEM101Q96IK0 257 aa11.08□□□□□ -0.64
CNOT9-208ENST00000542068 WFDC10AQ9H1F0 79 aa11.08□□□□□ -0.64
CNOT9-208ENST00000542068 UBR5O95071 2799 aaPredicted RBP11.08□□□□□ -0.64
CNOT9-208ENST00000542068 A0A096LNT2 108 aa11.08□□□□□ -0.64
CNOT9-208ENST00000542068 ZNF415Q09FC8 603 aa11.08□□□□□ -0.64
CNOT9-208ENST00000542068 PYGO1Q9Y3Y4 419 aa11.07□□□□□ -0.64
CNOT9-208ENST00000542068 TINCRA0A1B0GVN0 87 aa11.07□□□□□ -0.64
CNOT9-208ENST00000542068 LINC00694P0DN24 101 aa11.07□□□□□ -0.64
CNOT9-208ENST00000542068 CHCHD5Q9BSY4 110 aa11.06□□□□□ -0.64
CNOT9-208ENST00000542068 FLNBO75369 2602 aaKnown RBP11.06□□□□□ -0.64
CNOT9-208ENST00000542068 ATRQ13535 2644 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 CITED2Q99967 270 aaPredicted RBP11.05□□□□□ -0.64
CNOT9-208ENST00000542068 UNC79Q9P2D8 2635 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE12JA6NER3 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE7O76087 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 INSP01308 110 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE12FP0CL80 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE12GP0CL81 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE12IP0CL82 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 GAGE4Q13068 117 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 CIRBPQ14011 172 aaKnown RBP11.05□□□□□ -0.64
CNOT9-208ENST00000542068 PRIMA1Q86XR5 153 aa11.05□□□□□ -0.64
CNOT9-208ENST00000542068 DEFB114Q30KQ6 69 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 Q8N2B8 174 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 SPANXDQ9BXN6 97 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 SPANXA1Q9NS26 97 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 SPANXCQ9NY87 97 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 DNAJC9-AS1A6NH13 148 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 TOMM7Q9P0U1 55 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 CR1P17927 2039 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 PIK3CD-AS1Q5SR53 167 aa11.04□□□□□ -0.64
CNOT9-208ENST00000542068 CCL24O00175 119 aa11.03□□□□□ -0.64
CNOT9-208ENST00000542068 LST1O00453 97 aa11.03□□□□□ -0.64
CNOT9-208ENST00000542068 LINC00308Q8TCZ7 52 aa11.03□□□□□ -0.64
CNOT9-208ENST00000542068 TRGV2A0A075B6R0 118 aa11.03□□□□□ -0.64
CNOT9-208ENST00000542068 TMEM89A2RUT3 159 aa11.02□□□□□ -0.65
CNOT9-208ENST00000542068 PLA2G2AP14555 144 aa11.02□□□□□ -0.65
CNOT9-208ENST00000542068 TENM4Q6N022 2769 aa11.02□□□□□ -0.65
CNOT9-208ENST00000542068 NOP10Q9NPE3 64 aaKnown RBP11.02□□□□□ -0.65
CNOT9-208ENST00000542068 RS1O15537 224 aa11.01□□□□□ -0.65
CNOT9-208ENST00000542068 SOSTDC1Q6X4U4 206 aa11.01□□□□□ -0.65
CNOT9-208ENST00000542068 Q6ZTI0 123 aa11.01□□□□□ -0.65
CNOT9-208ENST00000542068 Q9HAA7 133 aa11.01□□□□□ -0.65
CNOT9-208ENST00000542068 LINC00242Q5T6M2 205 aa11.01□□□□□ -0.65
CNOT9-208ENST00000542068 C4orf3Q8WVX3 66 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms