RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 CDC42SE2Q9NRR3 84 aa12.51□□□□□ -0.41
VPS33A-205ENST00000541169 NPSP0C0P6 89 aa12.5□□□□□ -0.41
VPS33A-205ENST00000541169 CBLN2Q8IUK8 224 aa12.5□□□□□ -0.41
VPS33A-205ENST00000541169 PGPEP1Q9NXJ5 209 aa12.5□□□□□ -0.41
VPS33A-205ENST00000541169 PYGO1Q9Y3Y4 419 aa12.5□□□□□ -0.41
VPS33A-205ENST00000541169 CDPF1Q6NVV7 123 aa12.49□□□□□ -0.41
VPS33A-205ENST00000541169 LRCOL1A6NCL2 159 aa12.48□□□□□ -0.41
VPS33A-205ENST00000541169 IFI27P40305 119 aaPredicted RBP12.48□□□□□ -0.41
VPS33A-205ENST00000541169 MRPS36P82909 103 aaKnown RBP12.48□□□□□ -0.41
VPS33A-205ENST00000541169 C14orf177Q52M58 125 aa12.48□□□□□ -0.41
VPS33A-205ENST00000541169 CYSLTR1Q9Y271 337 aa12.48□□□□□ -0.41
VPS33A-205ENST00000541169 LINC01546A6NGU7 62 aa12.47□□□□□ -0.41
VPS33A-205ENST00000541169 CLPSL2Q6UWE3 100 aa12.47□□□□□ -0.41
VPS33A-205ENST00000541169 NTN5Q8WTR8 489 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-205ENST00000541169 RAB5BP61020 215 aa12.46□□□□□ -0.41
VPS33A-205ENST00000541169 SS18Q15532 418 aa12.46□□□□□ -0.41
VPS33A-205ENST00000541169 PAPPA-AS1Q5QFB9 102 aa12.46□□□□□ -0.41
VPS33A-205ENST00000541169 FA2HQ7L5A8 372 aa12.46□□□□□ -0.41
VPS33A-205ENST00000541169 C1orf196B1AJZ1 125 aa12.45□□□□□ -0.42
VPS33A-205ENST00000541169 RPL39P62891 51 aaKnown RBP12.45□□□□□ -0.42
VPS33A-205ENST00000541169 C2orf66Q6UXQ4 117 aa12.45□□□□□ -0.42
VPS33A-205ENST00000541169 S100A1P23297 94 aa12.44□□□□□ -0.42
VPS33A-205ENST00000541169 LINC00959A0A1B0GUT2 108 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 CFAP161Q6P656 301 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 SPATA12Q7Z6I5 190 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 Q8N814 137 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 MAPKAPK5-AS1Q8N8E1 139 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 AP5S1Q9NUS5 200 aa12.43□□□□□ -0.42
VPS33A-205ENST00000541169 IGLV10-54A0A075B6I4 117 aa12.42□□□□□ -0.42
VPS33A-205ENST00000541169 KRTAP26-1Q6PEX3 210 aa12.42□□□□□ -0.42
VPS33A-205ENST00000541169 Q6ZN92 141 aa12.42□□□□□ -0.42
VPS33A-205ENST00000541169 C18orf32Q8TCD1 76 aa12.42□□□□□ -0.42
VPS33A-205ENST00000541169 BAALCQ8WXS3 180 aa12.42□□□□□ -0.42
VPS33A-205ENST00000541169 CHCHD10Q8WYQ3 142 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-205ENST00000541169 IGKV3OR2-268A0A0C4DH90 116 aa12.41□□□□□ -0.42
VPS33A-205ENST00000541169 LINC00614P0C842 121 aa12.41□□□□□ -0.42
VPS33A-205ENST00000541169 TOMM6Q96B49 74 aa12.41□□□□□ -0.42
VPS33A-205ENST00000541169 TMEM141Q96I45 108 aa12.41□□□□□ -0.42
VPS33A-205ENST00000541169 COLCA2A8K830 154 aa12.4□□□□□ -0.42
VPS33A-205ENST00000541169 CD164L2Q6UWJ8 174 aa12.4□□□□□ -0.42
VPS33A-205ENST00000541169 TIMM17AQ99595 171 aa12.4□□□□□ -0.42
VPS33A-205ENST00000541169 Q6ZUT4 128 aa12.39□□□□□ -0.43
VPS33A-205ENST00000541169 ERASQ7Z444 233 aa12.39□□□□□ -0.43
VPS33A-205ENST00000541169 C2orf88Q9BSF0 95 aa12.39□□□□□ -0.43
VPS33A-205ENST00000541169 GAGE12HA6NDE8 117 aa12.38□□□□□ -0.43
VPS33A-205ENST00000541169 IGIPA6NJ69 53 aa12.38□□□□□ -0.43
VPS33A-205ENST00000541169 TEX43Q6ZNM6 134 aa12.38□□□□□ -0.43
VPS33A-205ENST00000541169 IGLV4-3A0A075B6K6 122 aa12.37□□□□□ -0.43
VPS33A-205ENST00000541169 C16orf90A8MZG2 172 aa12.37□□□□□ -0.43
VPS33A-205ENST00000541169 USP17L23D6RBM5 183 aa12.37□□□□□ -0.43
VPS33A-205ENST00000541169 TRGC2P03986 189 aa12.37□□□□□ -0.43
VPS33A-205ENST00000541169 CHCHD1Q96BP2 118 aaKnown RBP12.37□□□□□ -0.43
VPS33A-205ENST00000541169 VCX2Q9H322 139 aa12.37□□□□□ -0.43
VPS33A-205ENST00000541169 TRAV13-1A0A0B4J241 112 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 IFITM10A6NMD0 228 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 XCL1P47992 114 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 KRTAP10-2P60368 255 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 SCGB3A1Q96QR1 104 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 FRAS1Q86XX4 4008 aa12.36□□□□□ -0.43
VPS33A-205ENST00000541169 DNAH2Q9P225 4427 aa12.35□□□□□ -0.43
VPS33A-205ENST00000541169 IGLV5-52A0A0A0MRZ9 124 aa12.35□□□□□ -0.43
VPS33A-205ENST00000541169 SEC11AP67812 179 aa12.35□□□□□ -0.43
VPS33A-205ENST00000541169 FOXI1Q12951 378 aa12.35□□□□□ -0.43
VPS33A-205ENST00000541169 FAM104AQ969W3 186 aa12.35□□□□□ -0.43
VPS33A-205ENST00000541169 LECT2O14960 151 aa12.34□□□□□ -0.43
VPS33A-205ENST00000541169 AMELXQ99217 191 aa12.34□□□□□ -0.43
VPS33A-205ENST00000541169 HBDP02042 147 aa12.33□□□□□ -0.44
VPS33A-205ENST00000541169 WFDC2Q14508 124 aa12.33□□□□□ -0.44
VPS33A-205ENST00000541169 RNASE13Q5GAN3 156 aaKnown RBP12.33□□□□□ -0.44
VPS33A-205ENST00000541169 OPRPNQ99935 248 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-205ENST00000541169 DNAH10Q8IVF4 4471 aa12.33□□□□□ -0.44
VPS33A-205ENST00000541169 IGHV1-58A0A0C4DH39 117 aa12.32□□□□□ -0.44
VPS33A-205ENST00000541169 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-205ENST00000541169 COX7A2LO14548 114 aa12.32□□□□□ -0.44
VPS33A-205ENST00000541169 APOMO95445 188 aa12.31□□□□□ -0.44
VPS33A-205ENST00000541169 MALP21145 153 aa12.31□□□□□ -0.44
VPS33A-205ENST00000541169 GCSHP23434 173 aa12.31□□□□□ -0.44
VPS33A-205ENST00000541169 BAGE3Q86Y29 109 aa12.31□□□□□ -0.44
VPS33A-205ENST00000541169 hDV102S1A0JD36 115 aa12.3□□□□□ -0.44
VPS33A-205ENST00000541169 ATP6V1G1O75348 118 aa12.3□□□□□ -0.44
VPS33A-205ENST00000541169 SCO1O75880 301 aa12.3□□□□□ -0.44
VPS33A-205ENST00000541169 URB1-AS1Q96HZ7 61 aa12.3□□□□□ -0.44
VPS33A-205ENST00000541169 GVQW2A0A096LPI5 108 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-205ENST00000541169 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-205ENST00000541169 ATP5LO75964 103 aa12.29□□□□□ -0.44
VPS33A-205ENST00000541169 PRSS1P07477 247 aa12.29□□□□□ -0.44
VPS33A-205ENST00000541169 UBE2D1P51668 147 aa12.29□□□□□ -0.44
VPS33A-205ENST00000541169 FAM19A3Q7Z5A8 133 aa12.29□□□□□ -0.44
VPS33A-205ENST00000541169 DNAH17Q9UFH2 4485 aa12.28□□□□□ -0.44
VPS33A-205ENST00000541169 FAT2Q9NYQ8 4349 aa12.28□□□□□ -0.44
VPS33A-205ENST00000541169 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.28□□□□□ -0.44
VPS33A-205ENST00000541169 IGHV3OR16-9A0A0B4J2B5 98 aa12.28□□□□□ -0.44
VPS33A-205ENST00000541169 CNBPP62633 177 aaKnown RBP12.28□□□□□ -0.44
VPS33A-205ENST00000541169 HSBP1O75506 76 aa12.27□□□□□ -0.45
VPS33A-205ENST00000541169 LINC00242Q5T6M2 205 aa12.27□□□□□ -0.45
VPS33A-205ENST00000541169 LINC00173Q6ZV60 143 aa12.27□□□□□ -0.45
VPS33A-205ENST00000541169 LINC01561Q8N1V8 128 aa12.27□□□□□ -0.45
VPS33A-205ENST00000541169 C15orf56Q8N910 161 aa12.27□□□□□ -0.45
VPS33A-205ENST00000541169 HERVK_113P63121 156 aa12.26□□□□□ -0.45
VPS33A-205ENST00000541169 PMVKQ15126 192 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms