RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OPRPNQ99935 248 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-215ENST00000541108 LELP1Q5T871 98 aa12.25□□□□□ -0.45
CLIP1-215ENST00000541108 AMMECR1LQ6DCA0 310 aa12.25□□□□□ -0.45
CLIP1-215ENST00000541108 CHTOPQ9Y3Y2 248 aaKnown RBP12.25□□□□□ -0.45
CLIP1-215ENST00000541108 A0A1B0GUV1 79 aa12.24□□□□□ -0.45
CLIP1-215ENST00000541108 TMEM101Q96IK0 257 aa12.24□□□□□ -0.45
CLIP1-215ENST00000541108 PMCHL2Q9BQD1 86 aa12.24□□□□□ -0.45
CLIP1-215ENST00000541108 MRPL35Q9NZE8 188 aaKnown RBP12.24□□□□□ -0.45
CLIP1-215ENST00000541108 PLNP26678 52 aa12.23□□□□□ -0.45
CLIP1-215ENST00000541108 OR5A1Q8NGJ0 315 aa12.23□□□□□ -0.45
CLIP1-215ENST00000541108 CDC42SE2Q9NRR3 84 aa12.23□□□□□ -0.45
CLIP1-215ENST00000541108 DPM2O94777 84 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 PKIAP61925 76 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 GAGE6Q13070 117 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 STAB2Q8WWQ8 2551 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 TRAV9-2A0A087WT02 112 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 IGKCP01834 107 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 ATOH7Q8N100 152 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 ZNF664Q8N3J9 261 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 VAMP8Q9BV40 100 aa12.22□□□□□ -0.45
CLIP1-215ENST00000541108 PRKDCP78527 4128 aaKnown RBP12.21□□□□□ -0.45
CLIP1-215ENST00000541108 Q6ZUT4 128 aa12.21□□□□□ -0.45
CLIP1-215ENST00000541108 C2orf88Q9BSF0 95 aa12.21□□□□□ -0.45
CLIP1-215ENST00000541108 ZC2HC1BQ5TFG8 222 aa12.2□□□□□ -0.46
CLIP1-215ENST00000541108 TMEM262E9PQX1 116 aa12.19□□□□□ -0.46
CLIP1-215ENST00000541108 IGLV4-69A0A075B6H9 119 aa12.19□□□□□ -0.46
CLIP1-215ENST00000541108 TRAV8-6A0A0B4J262 113 aa12.19□□□□□ -0.46
CLIP1-215ENST00000541108 HSBP1L1C9JCN9 74 aa12.19□□□□□ -0.46
CLIP1-215ENST00000541108 ESRGQ1W209 222 aa12.18□□□□□ -0.46
CLIP1-215ENST00000541108 NFE4Q86UQ8 179 aa12.18□□□□□ -0.46
CLIP1-215ENST00000541108 IGLV4-60A0A075B6I1 120 aa12.17□□□□□ -0.46
CLIP1-215ENST00000541108 IGLL5B9A064 214 aa12.17□□□□□ -0.46
CLIP1-215ENST00000541108 RBX1P62877 108 aa12.17□□□□□ -0.46
CLIP1-215ENST00000541108 MPV17L2Q567V2 206 aa12.17□□□□□ -0.46
CLIP1-215ENST00000541108 RNASE13Q5GAN3 156 aaKnown RBP12.17□□□□□ -0.46
CLIP1-215ENST00000541108 PAM16Q9Y3D7 125 aa12.17□□□□□ -0.46
CLIP1-215ENST00000541108 IGLC3P0DOY3 106 aa12.16□□□□□ -0.46
CLIP1-215ENST00000541108 UBE2D1P51668 147 aa12.16□□□□□ -0.46
CLIP1-215ENST00000541108 MAJINQ3KP22 176 aa12.16□□□□□ -0.46
CLIP1-215ENST00000541108 FAM19A3Q7Z5A8 133 aa12.16□□□□□ -0.46
CLIP1-215ENST00000541108 hDV102S1A0JD36 115 aa12.15□□□□□ -0.46
CLIP1-215ENST00000541108 SEC11AP67812 179 aa12.15□□□□□ -0.46
CLIP1-215ENST00000541108 SPATA45Q537H7 98 aa12.15□□□□□ -0.46
CLIP1-215ENST00000541108 TINCRA0A1B0GVN0 87 aa12.14□□□□□ -0.47
CLIP1-215ENST00000541108 C11orf86A6NJI1 115 aa12.14□□□□□ -0.47
CLIP1-215ENST00000541108 A0A0J9YXV3 536 aa12.13□□□□□ -0.47
CLIP1-215ENST00000541108 NUPR2A6NF83 97 aa12.13□□□□□ -0.47
CLIP1-215ENST00000541108 CHAC1Q9BUX1 264 aa12.13□□□□□ -0.47
CLIP1-215ENST00000541108 STPG4Q8N801 248 aa12.13□□□□□ -0.47
CLIP1-215ENST00000541108 CCL18P55774 89 aa12.12□□□□□ -0.47
CLIP1-215ENST00000541108 CCL25O15444 150 aa12.11□□□□□ -0.47
CLIP1-215ENST00000541108 TRAV13-1A0A0B4J241 112 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 TSTD3H0UI37 97 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 TCTAP57738 103 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 HERVK_113P63121 156 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 LINC00242Q5T6M2 205 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 GEMIN7Q9H840 131 aaKnown RBP12.1□□□□□ -0.47
CLIP1-215ENST00000541108 KLK5Q9Y337 293 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-215ENST00000541108 ANGP03950 147 aaKnown RBP12.1□□□□□ -0.47
CLIP1-215ENST00000541108 TMEM170BQ5T4T1 132 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 WFDC10BQ8IUB3 73 aa12.1□□□□□ -0.47
CLIP1-215ENST00000541108 FBN3Q75N90 2809 aa12.09□□□□□ -0.47
CLIP1-215ENST00000541108 IGLV5-45A0A087WSX0 123 aa12.09□□□□□ -0.47
CLIP1-215ENST00000541108 ZNF22P17026 224 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-215ENST00000541108 ANKRD39Q53RE8 183 aa12.09□□□□□ -0.47
CLIP1-215ENST00000541108 APLNQ9ULZ1 77 aa12.09□□□□□ -0.47
CLIP1-215ENST00000541108 MRPS16Q9Y3D3 137 aaKnown RBP12.09□□□□□ -0.47
CLIP1-215ENST00000541108 HERVK_113P61574 105 aa12.08□□□□□ -0.48
CLIP1-215ENST00000541108 LINC00269Q8N2A0 174 aa12.08□□□□□ -0.48
CLIP1-215ENST00000541108 LINC00588Q9Y4M8 146 aa12.08□□□□□ -0.48
CLIP1-215ENST00000541108 LINC00959A0A1B0GUT2 108 aa12.07□□□□□ -0.48
CLIP1-215ENST00000541108 LINC01556Q5JQF7 62 aa12.07□□□□□ -0.48
CLIP1-215ENST00000541108 Q8N3U1 123 aa12.07□□□□□ -0.48
CLIP1-215ENST00000541108 UPK3BQ9BT76 320 aa12.07□□□□□ -0.48
CLIP1-215ENST00000541108 PRR34Q9NV39 138 aa12.07□□□□□ -0.48
CLIP1-215ENST00000541108 REG3AQ06141 175 aa12.06□□□□□ -0.48
CLIP1-215ENST00000541108 SS18Q15532 418 aa12.06□□□□□ -0.48
CLIP1-215ENST00000541108 PRO1933Q9H354 126 aa12.06□□□□□ -0.48
CLIP1-215ENST00000541108 TMEM223A0PJW6 202 aa12.06□□□□□ -0.48
CLIP1-215ENST00000541108 E9PLD3 99 aa12.06□□□□□ -0.48
CLIP1-215ENST00000541108 IGKV3OR2-268A0A0C4DH90 116 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 H3BRM9 83 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 DNAH10OSP0CZ25 163 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 COX6A2Q02221 97 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 LINC00469Q8N7U9 141 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 CDKN2A-AS1Q9UH64 79 aa12.05□□□□□ -0.48
CLIP1-215ENST00000541108 C14orf144Q96I85 54 aa12.04□□□□□ -0.48
CLIP1-215ENST00000541108 KLK12Q9UKR0 248 aa12.04□□□□□ -0.48
CLIP1-215ENST00000541108 IGKV2D-26A0A0A0MRZ7 120 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 IGHV3-30P01768 117 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 IGHV3-33P01772 117 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 IGHV3-30-3P0DP02 117 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 IGHV3-30-5P0DP03 117 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 COX8AP10176 69 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 UQCR10Q9UDW1 63 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 IGHV3OR16-9A0A0B4J2B5 98 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 SIVA1O15304 175 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 NMUP48645 174 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 MIEN1Q9BRT3 115 aa12.03□□□□□ -0.48
CLIP1-215ENST00000541108 TRAV8-4A0A0B4J246 113 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms