RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CFC1BP0CG36 223 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 CFC1P0CG37 223 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 UBE2D4Q9Y2X8 147 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 DAD1P61803 113 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 Q6ZSN1 163 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 C11orf72Q8NBR9 251 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 Q9H8V8 135 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 LINC00158P58513 81 aa7.8□□□□□ -1.16
CLIP1-213ENST00000540338 A0A0J9YXY3 114 aa7.8□□□□□ -1.16
CLIP1-213ENST00000540338 ATXN8Q156A1 80 aa7.8□□□□□ -1.16
CLIP1-213ENST00000540338 MUC4Q99102 2169 aa7.8□□□□□ -1.16
CLIP1-213ENST00000540338 SS18Q15532 418 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 CDKN2A-AS1Q9UH64 79 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 PAX4O43316 350 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 MRPS36P82909 103 aaKnown RBP7.79□□□□□ -1.16
CLIP1-213ENST00000540338 A8MTW9 85 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 GYPEP15421 78 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 C6orf226Q5I0X4 101 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 IFITM1P13164 125 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 ATP6V0E2Q8NHE4 81 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 CHCHD7Q9BUK0 85 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 EDA2RQ9HAV5 297 aa7.79□□□□□ -1.16
CLIP1-213ENST00000540338 TRBV6-4A0A1B0GX49 114 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 C9JAW5 83 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 SNCGO76070 127 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 WFDC2Q14508 124 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 FAM110AQ9BQ89 295 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 TIRAPP58753 221 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 RELNP78509 3460 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 CFAP161Q6P656 301 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 OR13C6PQ8NH95 151 aa7.78□□□□□ -1.16
CLIP1-213ENST00000540338 FASNP49327 2511 aaKnown RBP7.78□□□□□ -1.16
CLIP1-213ENST00000540338 F5H768 121 aa7.77□□□□□ -1.16
CLIP1-213ENST00000540338 TSPAN13O95857 204 aa7.77□□□□□ -1.16
CLIP1-213ENST00000540338 IGHV3-30P01768 117 aa7.77□□□□□ -1.16
CLIP1-213ENST00000540338 IGHV3-30-5P0DP03 117 aa7.77□□□□□ -1.16
CLIP1-213ENST00000540338 AMELXQ99217 191 aa7.77□□□□□ -1.16
CLIP1-213ENST00000540338 A0A096LPF7 62 aa7.77□□□□□ -1.17
CLIP1-213ENST00000540338 TEX48A0A1B0GUV7 120 aa7.77□□□□□ -1.17
CLIP1-213ENST00000540338 MALP21145 153 aa7.77□□□□□ -1.17
CLIP1-213ENST00000540338 TSPEAR-AS2P59090 65 aa7.77□□□□□ -1.17
CLIP1-213ENST00000540338 FLNAP21333 2647 aaKnown RBP7.77□□□□□ -1.17
CLIP1-213ENST00000540338 UFSP1Q6NVU6 142 aa7.77□□□□□ -1.17
CLIP1-213ENST00000540338 HERV-K104P63124 156 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 SH2D6Q7Z4S9 175 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 ITPR1Q14643 2758 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 UBE2D3P61077 147 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 UBE2D2P62837 147 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 DEFB135Q30KP9 77 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 SMIM9A6NGZ8 99 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 JMJD1CQ15652 2540 aa7.76□□□□□ -1.17
CLIP1-213ENST00000540338 UBE2D1P51668 147 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 CKS1BP61024 79 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 SIGMAR1Q99720 223 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 C11orf68Q9H3H3 251 aaKnown RBP7.75□□□□□ -1.17
CLIP1-213ENST00000540338 PRO0255Q9UI72 69 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 H7C423 109 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 CRPP02741 224 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 MIAQ16674 131 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 DAND5Q8N907 189 aa7.75□□□□□ -1.17
CLIP1-213ENST00000540338 A0A0B4J2C4 111 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 C3orf56Q8N813 242 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 A8MZ25 164 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 Q9UF83 564 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 C2orf82Q6UX34 121 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 C5orf38Q86SI9 138 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 ITPR3Q14573 2671 aa7.74□□□□□ -1.17
CLIP1-213ENST00000540338 LOC100131303A0A0U1RQF7 123 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 SLC25A20O43772 301 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 DNAL4O96015 105 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 ZFAND6Q6FIF0 208 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 LINC00482Q8N8I6 264 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 PPDPFLQ8WWR9 84 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 DEFB4AO15263 64 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 TRBV6-8A0A0A6YYG3 113 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 ATP5G1P05496 136 aa7.73□□□□□ -1.17
CLIP1-213ENST00000540338 G3V4G9 280 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 PFN2P35080 140 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 XCL1P47992 114 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 CR1P17927 2039 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 SPART-AS1P0CW21 52 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 FAM222AQ5U5X8 452 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 COX7B2Q8TF08 81 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 CLPSL2Q6UWE3 100 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 NDUFA1O15239 70 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 RBX1P62877 108 aa7.72□□□□□ -1.17
CLIP1-213ENST00000540338 LYRM9A8MSI8 78 aa7.71□□□□□ -1.17
CLIP1-213ENST00000540338 ANGP03950 147 aaKnown RBP7.71□□□□□ -1.17
CLIP1-213ENST00000540338 GTSF1LQ9H1H1 148 aa7.71□□□□□ -1.17
CLIP1-213ENST00000540338 CDC42SE2Q9NRR3 84 aa7.71□□□□□ -1.17
CLIP1-213ENST00000540338 LINC00694P0DN24 101 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 LINC00242Q5T6M2 205 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 TCL1BO95988 128 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 IGHV3-33P01772 117 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 OVOL2Q9BRP0 275 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 CSDC2Q9Y534 153 aaKnown RBP7.71□□□□□ -1.18
CLIP1-213ENST00000540338 ICOSQ9Y6W8 199 aa7.71□□□□□ -1.18
CLIP1-213ENST00000540338 SMG1Q96Q15 3661 aaKnown RBP7.7□□□□□ -1.18
CLIP1-213ENST00000540338 KRTAP1-1Q07627 177 aa7.7□□□□□ -1.18
CLIP1-213ENST00000540338 TIMM17BO60830 172 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms