RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 SMIM26A0A096LP01 95 aa4.97□□□□□ -1.61
PTPRB-203ENST00000538174 INAFM2P0DMQ5 153 aa4.97□□□□□ -1.61
PTPRB-203ENST00000538174 FAM222AQ5U5X8 452 aa4.97□□□□□ -1.61
PTPRB-203ENST00000538174 TOMM6Q96B49 74 aa4.97□□□□□ -1.61
PTPRB-203ENST00000538174 DNAH1Q9P2D7 4330 aa4.96□□□□□ -1.61
PTPRB-203ENST00000538174 H3BT86 120 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 TMEM141Q96I45 108 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 IGKCP01834 107 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 SMIM13P0DJ93 91 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 ERCC8Q13216 396 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 CLEC19AQ6UXS0 136 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 Q8N2B8 174 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 SMIM2Q9BVW6 85 aa4.96□□□□□ -1.62
PTPRB-203ENST00000538174 LINC00173Q6ZV60 143 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 NDUFA11Q86Y39 141 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 PRKDCP78527 4128 aaKnown RBP4.95□□□□□ -1.62
PTPRB-203ENST00000538174 TRRAPQ9Y4A5 3859 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 TRBV7-6A0A0J9YX20 115 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 hADV29S1A0JD25 119 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 TRGV3P03979 118 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 DAD1P61803 113 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 SCGB1D4Q6XE38 83 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 FAM19A3Q7Z5A8 133 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 KTN1-AS1Q86SY8 53 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 OR8A1Q8NGG7 326 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 TIMM17AQ99595 171 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 KIF25-AS1Q9Y6Z4 181 aa4.95□□□□□ -1.62
PTPRB-203ENST00000538174 hDV102S1A0JD36 115 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 E9PLD3 99 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 F8VRH5 84 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 APELAP0DMC3 54 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 RHOHQ15669 191 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 Q75L30 129 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 TEN1Q86WV5 123 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 KRTAP17-1Q9BYP8 105 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 SERP1Q9Y6X1 66 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 TRBV7-7A0A0K0K1E9 115 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 PRAC2D3DTV9 90 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 HLA-DMBP28068 263 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 SNRPD3P62318 126 aaKnown RBP4.94□□□□□ -1.62
PTPRB-203ENST00000538174 C11orf21Q9P2W6 132 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 DNAH3Q8TD57 4116 aa4.94□□□□□ -1.62
PTPRB-203ENST00000538174 PLXNB1O43157 2135 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 PLA2G1BP04054 148 aaKnown RBP4.93□□□□□ -1.62
PTPRB-203ENST00000538174 SUMO2P61956 95 aaKnown RBP4.93□□□□□ -1.62
PTPRB-203ENST00000538174 SRSF9Q13242 221 aaKnown RBP eCLIP4.93□□□□□ -1.62
PTPRB-203ENST00000538174 C15orf53Q8NAA6 179 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 TRBV27A0A0K0K1C4 114 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 POLR2KP53803 58 aaKnown RBP4.93□□□□□ -1.62
PTPRB-203ENST00000538174 CFAP126Q5VTH2 177 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 FP248Q71RG6 208 aaPredicted RBP4.93□□□□□ -1.62
PTPRB-203ENST00000538174 CEND1Q8N111 149 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 LINC01006Q8NI28 216 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 LINC01600Q96MT4 127 aa4.93□□□□□ -1.62
PTPRB-203ENST00000538174 MAP1AP78559 2803 aaPredicted RBP4.92□□□□□ -1.62
PTPRB-203ENST00000538174 G3V318 75 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 NPC2P61916 151 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 SPANXN1Q5VSR9 72 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 C6orf223Q8N319 242 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 FAM30AQ9NZY2 134 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 MGAM2Q2M2H8 2515 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 LY6HO94772 140 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 LINC00315P59091 139 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 Q8TAT8 98 aa4.92□□□□□ -1.62
PTPRB-203ENST00000538174 A0A0J9YX75 114 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 CD24P25063 80 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 SS18Q15532 418 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 NSUN5P1Q3KNT7 163 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 IMUPQ9GZP8 106 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 C19orf73Q9NVV2 129 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 IGHV1-58A0A0C4DH39 117 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 RBMY1BA6NDE4 496 aaKnown RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 RBMY1EA6NEQ0 496 aaKnown RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 NDUFC2-KCTD14E9PQ53 114 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 K7EQG2 157 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 RBMY1DP0C7P1 496 aaKnown RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 RBMY1A1P0DJD3 496 aaKnown RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 RNASE3P12724 160 aaKnown RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 SMCPP49901 116 aaPredicted RBP4.91□□□□□ -1.62
PTPRB-203ENST00000538174 KRTAP10-3P60369 221 aa4.91□□□□□ -1.62
PTPRB-203ENST00000538174 PKD1L1Q8TDX9 2849 aa4.9□□□□□ -1.62
PTPRB-203ENST00000538174 TRGV11A0A075B6L2 103 aa4.9□□□□□ -1.62
PTPRB-203ENST00000538174 CMC4P56277 68 aaPredicted RBP4.9□□□□□ -1.62
PTPRB-203ENST00000538174 PHLDA1Q8WV24 401 aaPredicted RBP4.9□□□□□ -1.62
PTPRB-203ENST00000538174 RHPN1-AS1Q9BWJ2 59 aa4.9□□□□□ -1.62
PTPRB-203ENST00000538174 C11orf86A6NJI1 115 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 RNASE4P34096 147 aaKnown RBP4.9□□□□□ -1.63
PTPRB-203ENST00000538174 CYSTM1Q9H1C7 97 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 PHLDA3Q9Y5J5 127 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 IGIPA6NJ69 53 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 LINC01548A6NM66 108 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 M0R378 163 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 NDUFS5O43920 106 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 PRSS1P07477 247 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 MSRB1Q9NZV6 116 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 PLA2G2DQ9UNK4 145 aa4.9□□□□□ -1.63
PTPRB-203ENST00000538174 TRBV25-1A0A075B6N4 114 aa4.89□□□□□ -1.63
PTPRB-203ENST00000538174 TRAV40A0A0B4J280 105 aa4.89□□□□□ -1.63
PTPRB-203ENST00000538174 LOC389332A0A1B0GUA5 103 aa4.89□□□□□ -1.63
PTPRB-203ENST00000538174 IGHV3-23P01764 117 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms