RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 EDA2RQ9HAV5 297 aa10.79□□□□□ -0.68
SYNE1-236ENST00000537750 IGHV4-61A0A0C4DH41 118 aa10.78□□□□□ -0.68
SYNE1-236ENST00000537750 HOXD3P31249 432 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-236ENST00000537750 LINC00526Q96FQ7 95 aa10.78□□□□□ -0.68
SYNE1-236ENST00000537750 PIK3CD-AS1Q5SR53 167 aa10.77□□□□□ -0.69
SYNE1-236ENST00000537750 LINC00242Q5T6M2 205 aa10.77□□□□□ -0.69
SYNE1-236ENST00000537750 DNAJC30Q96LL9 226 aa10.77□□□□□ -0.69
SYNE1-236ENST00000537750 IGLV5-45A0A087WSX0 123 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 PSMB8P28062 276 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 NOTCH3Q9UM47 2321 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 SDIM1Q6ZPB5 146 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 C5orf38Q86SI9 138 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 PRIMA1Q86XR5 153 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 NRGNQ92686 78 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 PEMTQ9UBM1 199 aa10.76□□□□□ -0.69
SYNE1-236ENST00000537750 TRAV13-1A0A0B4J241 112 aa10.75□□□□□ -0.69
SYNE1-236ENST00000537750 IGLV5-39A0A0G2JS06 123 aa10.75□□□□□ -0.69
SYNE1-236ENST00000537750 TRACP01848 142 aa10.75□□□□□ -0.69
SYNE1-236ENST00000537750 LY6DQ14210 128 aa10.75□□□□□ -0.69
SYNE1-236ENST00000537750 SMIM1B2RUZ4 78 aa10.74□□□□□ -0.69
SYNE1-236ENST00000537750 DEFB131AP59861 70 aa10.74□□□□□ -0.69
SYNE1-236ENST00000537750 CSDC2Q9Y534 153 aaKnown RBP10.74□□□□□ -0.69
SYNE1-236ENST00000537750 RBMY1BA6NDE4 496 aaKnown RBP10.74□□□□□ -0.69
SYNE1-236ENST00000537750 RBMY1EA6NEQ0 496 aaKnown RBP10.74□□□□□ -0.69
SYNE1-236ENST00000537750 RBMY1DP0C7P1 496 aaKnown RBP10.74□□□□□ -0.69
SYNE1-236ENST00000537750 C9orf129Q5T035 196 aaKnown RBP10.74□□□□□ -0.69
SYNE1-236ENST00000537750 C2orf48Q96LS8 159 aa10.74□□□□□ -0.69
SYNE1-236ENST00000537750 PIMREGQ9BSJ6 248 aa10.74□□□□□ -0.69
SYNE1-236ENST00000537750 COX7CP15954 63 aa10.73□□□□□ -0.69
SYNE1-236ENST00000537750 CYSTM1Q9H1C7 97 aa10.73□□□□□ -0.69
SYNE1-236ENST00000537750 KLRB1Q12918 225 aa10.72□□□□□ -0.69
SYNE1-236ENST00000537750 hADV29S1A0JD25 119 aa10.72□□□□□ -0.69
SYNE1-236ENST00000537750 AVPP01185 164 aa10.72□□□□□ -0.69
SYNE1-236ENST00000537750 IGHV3-53P01767 116 aa10.72□□□□□ -0.69
SYNE1-236ENST00000537750 ZANQ9Y493 2812 aa10.71□□□□□ -0.69
SYNE1-236ENST00000537750 MALP21145 153 aa10.71□□□□□ -0.69
SYNE1-236ENST00000537750 CXCL5P42830 114 aa10.71□□□□□ -0.69
SYNE1-236ENST00000537750 C19orf84I3L1E1 186 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 ZNF415Q09FC8 603 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 RNF152Q8N8N0 203 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 IGKV3D-7A0A0C4DH55 119 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 IGHV4-59P01825 116 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 ATP5G1P05496 136 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 INAFM2P0DMQ5 153 aa10.7□□□□□ -0.7
SYNE1-236ENST00000537750 FAM19A5Q7Z5A7 132 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-236ENST00000537750 C14orf132Q9NPU4 83 aa10.69□□□□□ -0.7
SYNE1-236ENST00000537750 NCOR2Q9Y618 2525 aa10.69□□□□□ -0.7
SYNE1-236ENST00000537750 HIST2H2BCQ6DN03 193 aa10.69□□□□□ -0.7
SYNE1-236ENST00000537750 HIST2H2BDQ6DRA6 164 aa10.69□□□□□ -0.7
SYNE1-236ENST00000537750 FAM222AQ5U5X8 452 aa10.68□□□□□ -0.7
SYNE1-236ENST00000537750 LINC00337Q8N6G1 96 aa10.68□□□□□ -0.7
SYNE1-236ENST00000537750 Q96MF0 132 aa10.68□□□□□ -0.7
SYNE1-236ENST00000537750 A0A087WYN8 130 aa10.68□□□□□ -0.7
SYNE1-236ENST00000537750 A0A087WVE0 104 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 J3KT08 172 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 ATP5J2P56134 94 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 C11orf72Q8NBR9 251 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 COPS9Q8WXC6 57 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 USP9YO00507 2555 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-236ENST00000537750 HIST1H4AP62805 103 aaKnown RBP10.67□□□□□ -0.7
SYNE1-236ENST00000537750 CHD8Q9HCK8 2581 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 F5H768 121 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 CRYGAP11844 174 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 DEFB136Q30KP8 78 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 PRORYQ9H606 182 aa10.67□□□□□ -0.7
SYNE1-236ENST00000537750 ATOX1O00244 68 aa10.66□□□□□ -0.7
SYNE1-236ENST00000537750 DNAL4O96015 105 aa10.66□□□□□ -0.7
SYNE1-236ENST00000537750 MXRA5Q9NR99 2828 aa10.66□□□□□ -0.7
SYNE1-236ENST00000537750 IGKV2-28A0A075B6P5 120 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 IGHV4-30-2A0A087WSY4 118 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 A0A1B0GX51 115 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 IGKV2D-28P01615 120 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 NTM-AS1Q6ZSK4 140 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 LRRC75A-AS1Q8N1F1 130 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 CRPP02741 224 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 RPL28P46779 137 aaKnown RBP10.65□□□□□ -0.7
SYNE1-236ENST00000537750 C18orf65Q6ZTR6 163 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 MIR7-3HGQ8N6C7 128 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 KIR2DL5BQ8NHK3 375 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 LINC00846Q9NV44 126 aa10.65□□□□□ -0.7
SYNE1-236ENST00000537750 MYO9AB2RTY4 2548 aa10.64□□□□□ -0.71
SYNE1-236ENST00000537750 TMEM89A2RUT3 159 aa10.64□□□□□ -0.71
SYNE1-236ENST00000537750 SLURP1P55000 103 aa10.64□□□□□ -0.71
SYNE1-236ENST00000537750 DEFB112Q30KQ8 113 aa10.64□□□□□ -0.71
SYNE1-236ENST00000537750 SMIM9A6NGZ8 99 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 RPL18AQ02543 176 aaKnown RBP10.63□□□□□ -0.71
SYNE1-236ENST00000537750 SMIM11BQ8TCY0 68 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 MSMBP08118 114 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 C10orf105Q8TEF2 133 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 TOMM7Q9P0U1 55 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 ITPR1Q14643 2758 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 TRAV13-2A0A0B4J235 113 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 SND1-IT1Q9HBX3 110 aa10.63□□□□□ -0.71
SYNE1-236ENST00000537750 CDC42SE2Q9NRR3 84 aa10.62□□□□□ -0.71
SYNE1-236ENST00000537750 SLPIP03973 132 aa10.62□□□□□ -0.71
SYNE1-236ENST00000537750 NCR3O14931 201 aa10.61□□□□□ -0.71
SYNE1-236ENST00000537750 XCL2Q9UBD3 114 aa10.61□□□□□ -0.71
SYNE1-236ENST00000537750 TRGV1A0A0A0MS02 117 aa10.61□□□□□ -0.71
SYNE1-236ENST00000537750 IGKV3OR2-268A0A0C4DH90 116 aa10.61□□□□□ -0.71
SYNE1-236ENST00000537750 NBL1P41271 181 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms