RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 SLC25A20O43772 301 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 CIDEAO60543 219 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 TIMM17BO60830 172 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 MIAQ16674 131 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 Q1RN00 199 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 CDKN2A-AS1Q9UH64 79 aa11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 SONP18583 2426 aaKnown RBP11.53□□□□□ -0.56
CHMP1A-202ENST00000535997 NF1P21359 2839 aa11.52□□□□□ -0.56
CHMP1A-202ENST00000535997 IGHV3OR16-12A0A075B7B8 117 aa11.52□□□□□ -0.56
CHMP1A-202ENST00000535997 TRGV1A0A0A0MS02 117 aa11.52□□□□□ -0.56
CHMP1A-202ENST00000535997 TRBV10-1A0A0K0K1A3 114 aa11.52□□□□□ -0.56
CHMP1A-202ENST00000535997 A8MZ25 164 aa11.52□□□□□ -0.56
CHMP1A-202ENST00000535997 YAE1D1Q9NRH1 226 aa11.52□□□□□ -0.57
CHMP1A-202ENST00000535997 ITPR3Q14573 2671 aa11.52□□□□□ -0.57
CHMP1A-202ENST00000535997 ATXN8Q156A1 80 aa11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 CDIP1Q9H305 208 aa11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 CSDC2Q9Y534 153 aaKnown RBP11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 C9JAW5 83 aa11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 RPL36AP83881 106 aaKnown RBP11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 RPL36ALQ969Q0 106 aaKnown RBP11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 TMEM101Q96IK0 257 aa11.51□□□□□ -0.57
CHMP1A-202ENST00000535997 IFITM1P13164 125 aa11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 HERVK_113P63121 156 aa11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 DAZ2Q13117 558 aaKnown RBP11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 DAZ4Q86SG3 579 aaKnown RBP11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 ANKRD29Q8N6D5 301 aa11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 C11orf44Q8N8P7 122 aa11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 DAZ3Q9NR90 486 aaKnown RBP11.5□□□□□ -0.57
CHMP1A-202ENST00000535997 A0A1W2PRX2 142 aa11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 NDUFA1O15239 70 aa11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 CMC4P56277 68 aaPredicted RBP11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 FAM19A3Q7Z5A8 133 aa11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 LINC01600Q96MT4 127 aa11.49□□□□□ -0.57
CHMP1A-202ENST00000535997 K7EQD1 137 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 WFDC11Q8NEX6 87 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 TRAV4A0A0B4J268 109 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 TRIAP1O43715 76 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 COX6A2Q02221 97 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 CIRBPQ14011 172 aaKnown RBP11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 LINC00242Q5T6M2 205 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 Q6ZTI0 123 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 ESM1Q9NQ30 184 aa11.48□□□□□ -0.57
CHMP1A-202ENST00000535997 IGLV5-39A0A0G2JS06 123 aa11.47□□□□□ -0.57
CHMP1A-202ENST00000535997 LINC01620Q4KN68 170 aa11.47□□□□□ -0.57
CHMP1A-202ENST00000535997 COX6CP09669 75 aa11.47□□□□□ -0.57
CHMP1A-202ENST00000535997 TMEM262E9PQX1 116 aa11.46□□□□□ -0.57
CHMP1A-202ENST00000535997 LINC00694P0DN24 101 aa11.46□□□□□ -0.57
CHMP1A-202ENST00000535997 NTM-AS1Q6ZSK4 140 aa11.46□□□□□ -0.57
CHMP1A-202ENST00000535997 CITED2Q99967 270 aaPredicted RBP11.46□□□□□ -0.57
CHMP1A-202ENST00000535997 ICOSQ9Y6W8 199 aa11.46□□□□□ -0.57
CHMP1A-202ENST00000535997 NOTCH3Q9UM47 2321 aa11.45□□□□□ -0.58
CHMP1A-202ENST00000535997 NBPF19A0A087WUL8 3843 aa11.45□□□□□ -0.58
CHMP1A-202ENST00000535997 CCDC168Q8NDH2 2452 aa11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 FAM110AQ9BQ89 295 aa11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 TRBV10-2A0A0K0K1G8 114 aa11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 NPC2P61916 151 aa11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 NOP10Q9NPE3 64 aaKnown RBP11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 CDC42SE2Q9NRR3 84 aa11.44□□□□□ -0.58
CHMP1A-202ENST00000535997 GIG44P09565 113 aaPredicted RBP11.43□□□□□ -0.58
CHMP1A-202ENST00000535997 FLNAP21333 2647 aaKnown RBP11.43□□□□□ -0.58
CHMP1A-202ENST00000535997 LINC01006Q8NI28 216 aa11.43□□□□□ -0.58
CHMP1A-202ENST00000535997 C16orf95Q9H693 158 aa11.43□□□□□ -0.58
CHMP1A-202ENST00000535997 Q9H8V8 135 aa11.43□□□□□ -0.58
CHMP1A-202ENST00000535997 C16orf74Q96GX8 76 aa11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 SETD2Q9BYW2 2564 aaPredicted RBP11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 GAGE12JA6NER3 117 aa11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 SMIM1B2RUZ4 78 aa11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 GAGE4Q13068 117 aa11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 GAGE5Q13069 117 aa11.42□□□□□ -0.58
CHMP1A-202ENST00000535997 TRAV13-1A0A0B4J241 112 aa11.41□□□□□ -0.58
CHMP1A-202ENST00000535997 NDUFA7O95182 113 aa11.41□□□□□ -0.58
CHMP1A-202ENST00000535997 XGP55808 180 aa11.41□□□□□ -0.58
CHMP1A-202ENST00000535997 DAND5Q8N907 189 aa11.41□□□□□ -0.58
CHMP1A-202ENST00000535997 COPS9Q8WXC6 57 aa11.41□□□□□ -0.58
CHMP1A-202ENST00000535997 RPL13AP40429 203 aaKnown RBP11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 LINC00308Q8TCZ7 52 aa11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 C2CD3Q4AC94 2353 aa11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 IGLV1-51P01701 117 aa11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 MT-ATP8P03928 68 aa11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 RNASE1P07998 156 aaKnown RBP11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 NTN5Q8WTR8 489 aaPredicted RBP11.4□□□□□ -0.58
CHMP1A-202ENST00000535997 A0A1B0GV72 72 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 PLAC8L1A1L4L8 177 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 NIPBLQ6KC79 2804 aaeCLIP11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 CUBNO60494 3623 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 TRGV2A0A075B6R0 118 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 TRBV6-4A0A1B0GX49 114 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 H7C423 109 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 OVOL2Q9BRP0 275 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 TMEM243Q9BU79 118 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 C19orf73Q9NVV2 129 aa11.39□□□□□ -0.59
CHMP1A-202ENST00000535997 SETXQ7Z333 2677 aaKnown RBP11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 JMJD1CQ15652 2540 aa11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 F5H768 121 aa11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 UBE2L6O14933 153 aa11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 LST1O00453 97 aa11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 CSNK1G2-AS1Q8NCQ2 148 aa11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 ZNF625Q96I27 306 aaPredicted RBP11.38□□□□□ -0.59
CHMP1A-202ENST00000535997 H3BT86 120 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms