RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CD28P10747 220 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 MRPS21P82921 87 aaKnown RBP4.2□□□□□ -1.74
CD44-225ENST00000527326 CFHR1Q03591 330 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 Q0VFX4 171 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 C6orf223Q8N319 242 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 C20orf203Q8NBC4 194 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 BPESC1Q9GZL8 116 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 ASH1LQ9NR48 2969 aaKnown RBP4.2□□□□□ -1.74
CD44-225ENST00000527326 SNURFQ9Y675 71 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 SMAD5-AS1Q9Y6J3 95 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 INTS1Q8N201 2190 aaKnown RBP4.2□□□□□ -1.74
CD44-225ENST00000527326 FER1L5A0AVI2 2057 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 CEP295Q9C0D2 2601 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 MED12Q93074 2177 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 TRBV7-4A0A0J9YYF1 115 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 CRPP02741 224 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 RFPL3SP0C7P2 107 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 PRB4P10163 310 aaPredicted RBP4.19□□□□□ -1.74
CD44-225ENST00000527326 HOXD3P31249 432 aaPredicted RBP4.19□□□□□ -1.74
CD44-225ENST00000527326 FUSP35637 526 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-225ENST00000527326 APOC4P55056 127 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 FAM229BQ4G0N7 80 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 PIK3CD-AS1Q5SR53 167 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 SUMO4Q6EEV6 95 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 SOSTDC1Q6X4U4 206 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 OPRPNQ99935 248 aaPredicted RBP4.19□□□□□ -1.74
CD44-225ENST00000527326 RPP25Q9BUL9 199 aaKnown RBP4.19□□□□□ -1.74
CD44-225ENST00000527326 Q9HAA7 133 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 ORMDL1Q9P0S3 153 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 KIF25-AS1Q9Y6Z4 181 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 PI4KAP42356 2102 aa4.19□□□□□ -1.74
CD44-225ENST00000527326 CNOT1A5YKK6 2376 aaKnown RBP4.19□□□□□ -1.74
CD44-225ENST00000527326 LAMA5O15230 3695 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 IGF2RP11717 2491 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 PRAC2D3DTV9 90 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 IGF1P05019 195 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 LINC00315P59091 139 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 LPAL2Q16609 132 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 DEFB133Q30KQ1 61 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 Q6ZS52 159 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 Q6ZVQ6 151 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 ZNF625Q96I27 306 aaPredicted RBP4.18□□□□□ -1.74
CD44-225ENST00000527326 UBE2E2Q96LR5 201 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 DEFB127Q9H1M4 99 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 ARRDC1-AS1Q9H2J1 176 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 ZNRD1Q9P1U0 126 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 ZNF580Q9UK33 172 aa4.18□□□□□ -1.74
CD44-225ENST00000527326 IGLV5-45A0A087WSX0 123 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 PRYO14603 147 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 UBE2L6O14933 153 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 IGKV3-15P01624 115 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 CTSGP08311 255 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 CXCL6P80162 114 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 NDPQ00604 133 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.17□□□□□ -1.74
CD44-225ENST00000527326 TMEM254Q8TBM7 123 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 LINC00588Q9Y4M8 146 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 CACNA1DQ01668 2161 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 NBEAQ8NFP9 2946 aa4.17□□□□□ -1.74
CD44-225ENST00000527326 DOCK7Q96N67 2140 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 HELZ2Q9BYK8 2649 aaKnown RBP4.16□□□□□ -1.74
CD44-225ENST00000527326 IGLV11-55A0A075B6I3 123 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 IGHV1-3A0A0C4DH29 117 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 M0R378 163 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 NCR3O14931 201 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 APELAP0DMC3 54 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 MIR7-3HGQ8N6C7 128 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 WFDC9Q8NEX5 89 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 LINC00167Q96N53 147 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 PCNX2A6NKB5 2137 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 LOC400499M0QZD8 3231 aa4.16□□□□□ -1.74
CD44-225ENST00000527326 A0A087WYN8 130 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 hDV103S1A0JD37 113 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 IGHV1-2P23083 117 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 UBE2AP49459 152 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 NREPQ16612 68 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 C9orf129Q5T035 196 aaKnown RBP4.15□□□□□ -1.75
CD44-225ENST00000527326 Q6ZTC4 211 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 C11orf45Q8TAV5 145 aa4.15□□□□□ -1.75
CD44-225ENST00000527326 DSPP15924 2871 aaKnown RBP4.15□□□□□ -1.75
CD44-225ENST00000527326 TNCP24821 2201 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 SDK1Q7Z5N4 2213 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 ASCC3Q8N3C0 2202 aaKnown RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 TRAV10A0A0B4J240 114 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 IGLV5-39A0A0G2JS06 123 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 KRTAP23-1A1A580 65 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 IGKV2-29A2NJV5 120 aaPredicted RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 PINLYPA6NC86 204 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 TMEM256-PLSCR3K7ERE1 68 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 LECT2O14960 151 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 ZNF73O43830 326 aaPredicted RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 IGLV1-44P01699 117 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 RNASE3P12724 160 aaKnown RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 LINC01547P58512 204 aaPredicted RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 PRR9Q5T870 116 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 UNQ9165/PRO28630Q6UXU0 137 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 PHF5AQ7RTV0 110 aaKnown RBP4.14□□□□□ -1.75
CD44-225ENST00000527326 Q8N6K4 173 aa4.14□□□□□ -1.75
CD44-225ENST00000527326 ZFAND2AQ8N6M9 145 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms