RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 M0R233 179 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 CREBL2O60519 120 aaPredicted RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 TIMM17BO60830 172 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 GYPBP06028 91 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 ZNF705BP0CI00 300 aaPredicted RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 IL7P13232 177 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 SS18Q15532 418 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 LINC01590Q5TEZ4 76 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 MIC13Q5XKP0 118 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 OR2T2Q6IF00 324 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 Q6ZQT7 251 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 KLF14Q8TD94 323 aaPredicted RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 C10orf105Q8TEF2 133 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 CLEC2BQ92478 149 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 AQP3Q92482 292 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 CHCHD1Q96BP2 118 aaKnown RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 DYNLRB1Q9NP97 96 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 TMEM106BQ9NUM4 274 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 SONP18583 2426 aaKnown RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 HIVEP2P31629 2446 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 FBN1P35555 2871 aaKnown RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 FN1P02751 2386 aaKnown RBP2.93□□□□□ -1.94
CD44-220ENST00000525688 JMJD1CQ15652 2540 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 MUC21A0A0G2JKD1 596 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 A6NN06 94 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 C17orf98A8MV24 154 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 RPS27P42677 84 aaKnown RBP2.92□□□□□ -1.94
CD44-220ENST00000525688 CIRBPQ14011 172 aaKnown RBP2.92□□□□□ -1.94
CD44-220ENST00000525688 KRTAP21-3Q3LHN1 58 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 ASB16-AS1Q495Z4 193 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 FAM229BQ4G0N7 80 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 FAM74A1Q5RGS3 127 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 Q5W150 140 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 C12orf73Q69YU5 71 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 Q6P435 159 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 DPPA3Q6W0C5 159 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 FP248Q71RG6 208 aaPredicted RBP2.92□□□□□ -1.94
CD44-220ENST00000525688 C1orf64Q8NEQ6 169 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 RNF5Q99942 180 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 SMR3AQ99954 134 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 LINC00467Q9BRT7 94 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 REG4Q9BYZ8 158 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 ABCA1O95477 2261 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 ATRQ13535 2644 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 CUBNO60494 3623 aa2.92□□□□□ -1.94
CD44-220ENST00000525688 TANC2Q9HCD6 1990 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 ZNF736B4DX44 427 aaPredicted RBP2.91□□□□□ -1.94
CD44-220ENST00000525688 LYNX1G3V0Z9 82 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 G3V3Q6 166 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 H3BQ85 93 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 M0R135 149 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 MT-ATP8P03928 68 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 LYNX1P0DP58 116 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 ETV6P41212 452 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 NPC2P61916 151 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 CCL8P80075 99 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 Q0VG73 95 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 Q6ZR03 302 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 Q8N9L7 120 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 SPTSSAQ969W0 71 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 AMELYQ99218 206 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 RETNLBQ9BQ08 111 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 NABP2Q9BQ15 211 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 BPESC1Q9GZL8 116 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 ATG5Q9H1Y0 275 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 BET1LQ9NYM9 111 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 TPRKBQ9Y3C4 175 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 CR1P17927 2039 aa2.91□□□□□ -1.94
CD44-220ENST00000525688 CHD3Q12873 2000 aaKnown RBP2.91□□□□□ -1.94
CD44-220ENST00000525688 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.91□□□□□ -1.94
CD44-220ENST00000525688 ABCA2Q9BZC7 2435 aa2.9□□□□□ -1.94
CD44-220ENST00000525688 FAM24AA6NFZ4 105 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 IQCF6A8MYZ5 107 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 LYRM1O43325 122 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 COL8A2P25067 703 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 CKS2P33552 79 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 DEFB116Q30KQ4 102 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 SPRNQ5BIV9 151 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 ATP11AUNQ6ZP68 121 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 HYLS1Q96M11 299 aa2.9□□□□□ -1.95
CD44-220ENST00000525688 NHP2Q9NX24 153 aaKnown RBP2.9□□□□□ -1.95
CD44-220ENST00000525688 COL6A5A8TX70 2615 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 IGLV4-69A0A075B6H9 119 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 TRAV7A0A075B6U4 112 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 TMEM235A6NFC5 223 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 COLCA2A8K830 154 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 J3QRE1 110 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 GNRH2O43555 120 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 IGLV3-1P01715 115 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 TRAPPC2P0DI81 140 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 TRAPPC2BP0DI82 140 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 FXYD2P54710 66 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 SNRPGP62308 76 aaKnown RBP2.89□□□□□ -1.95
CD44-220ENST00000525688 ATP6V0E2Q8NHE4 81 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 DSCR8Q96T75 97 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 NPVFQ9HCQ7 196 aa2.89□□□□□ -1.95
CD44-220ENST00000525688 MALRD1Q5VYJ5 2156 aa2.88□□□□□ -1.95
CD44-220ENST00000525688 STAB1Q9NY15 2570 aa2.88□□□□□ -1.95
CD44-220ENST00000525688 TRBV10-2A0A0K0K1G8 114 aa2.88□□□□□ -1.95
CD44-220ENST00000525688 B4DSR2 109 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms