RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 KAAG1Q9UBP8 84 aa7.5□□□□□ -1.21
PDGFRB-207ENST00000520579 FAM208BQ5VWN6 2430 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 LINC01546A6NGU7 62 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 PRB1P04280 392 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 SNRPD3P62318 126 aaKnown RBP7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 Q8N9W7 124 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 ZFHX3Q15911 3703 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 LY6LH3BQJ8 138 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 LEPROTO15243 131 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 HIST2H2BDQ6DRA6 164 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 TRBV7-1A0A0A6YYK4 115 aa7.49□□□□□ -1.21
PDGFRB-207ENST00000520579 ACACBO00763 2458 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 CACNA1AO00555 2505 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 IGHV3OR16-12A0A075B7B8 117 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 SAA4P35542 130 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 C9orf139Q6ZV77 190 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 RHPN1-AS1Q9BWJ2 59 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 SERP1Q9Y6X1 66 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 TMEM223A0PJW6 202 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 DNAL4O96015 105 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 ZFP36P26651 326 aaKnown RBP7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 PSMG3-AS1Q96PY0 264 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 CCDC168Q8NDH2 2452 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 LINC01619G3V211 115 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 AMELXQ99217 191 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 MOB4Q9Y3A3 225 aa7.48□□□□□ -1.21
PDGFRB-207ENST00000520579 AVPP01185 164 aa7.47□□□□□ -1.21
PDGFRB-207ENST00000520579 TOMM7Q9P0U1 55 aa7.47□□□□□ -1.21
PDGFRB-207ENST00000520579 TRAV23DV6A0A075B6W5 121 aa7.47□□□□□ -1.21
PDGFRB-207ENST00000520579 GHRHP01286 108 aa7.47□□□□□ -1.21
PDGFRB-207ENST00000520579 NDUFC2-KCTD14E9PQ53 114 aa7.46□□□□□ -1.21
PDGFRB-207ENST00000520579 K7ENP7 123 aa7.46□□□□□ -1.21
PDGFRB-207ENST00000520579 NPBQ8NG41 125 aa7.46□□□□□ -1.21
PDGFRB-207ENST00000520579 RNF5Q99942 180 aa7.46□□□□□ -1.21
PDGFRB-207ENST00000520579 FAM19A1Q7Z5A9 133 aa7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 TMEM141Q96I45 108 aa7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 C11orf68Q9H3H3 251 aaKnown RBP7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 HIVEP3Q5T1R4 2406 aa7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 ZFYVE26Q68DK2 2539 aa7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 COX8CQ7Z4L0 72 aa7.46□□□□□ -1.22
PDGFRB-207ENST00000520579 VPS13CQ709C8 3753 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 BAALC-AS2P0C853 105 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 DAZ2Q13117 558 aaKnown RBP7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 KHDC1LQ5JSQ8 128 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 DAZ3Q9NR90 486 aaKnown RBP7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 IGLV4-3A0A075B6K6 122 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 FAM223BA6NKX1 122 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 IGHG2P01859 326 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 POLR2KP53803 58 aaKnown RBP7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 NAV2Q8IVL1 2488 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 CXCL5P42830 114 aa7.45□□□□□ -1.22
PDGFRB-207ENST00000520579 WFDC9Q8NEX5 89 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 PPP1R17O96001 155 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 Q9H8V8 135 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 PAX4O43316 350 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 IGHV3-53P01767 116 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 DAD1P61803 113 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 PIK3CD-AS1Q5SR53 167 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 Q8N2B8 174 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 SNURFQ9Y675 71 aa7.44□□□□□ -1.22
PDGFRB-207ENST00000520579 C20orf203Q8NBC4 194 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 TIMM17AQ99595 171 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 LINC00315P59091 139 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 CD164Q04900 197 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 C14orf132Q9NPU4 83 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 CDKN2A-AS1Q9UH64 79 aa7.43□□□□□ -1.22
PDGFRB-207ENST00000520579 IGHV1-69DA0A0B4J2H0 117 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 TRBV30A0A0K0K1B3 111 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 SLPIP03973 132 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 COPS9Q8WXC6 57 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 COL27A1Q8IZC6 1860 aaPredicted RBP7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 CRYBG3Q68DQ2 2970 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 IGHV4-4A0A075B6R2 117 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 LY6G5BQ8NDX9 201 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 BLCAPP62952 87 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 HIST2H2BCQ6DN03 193 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 C5orf38Q86SI9 138 aa7.42□□□□□ -1.22
PDGFRB-207ENST00000520579 LST1O00453 97 aa7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 HRNRQ86YZ3 2850 aaPredicted RBP7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 PKD1L2Q7Z442 2459 aa7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 CSMD2Q7Z408 3487 aa7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 M0QY20 66 aa7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 IGFL2Q6UWQ7 119 aa7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 ITLN2Q8WWU7 325 aaPredicted RBP7.41□□□□□ -1.22
PDGFRB-207ENST00000520579 MINOS1Q5TGZ0 78 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 FP248Q71RG6 208 aaPredicted RBP7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 TMEM61Q8N0U2 210 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 XCL1P47992 114 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 C10orf99Q6UWK7 81 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 XCL2Q9UBD3 114 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 KIF25-AS1Q9Y6Z4 181 aa7.4□□□□□ -1.22
PDGFRB-207ENST00000520579 INAFM2P0DMQ5 153 aa7.4□□□□□ -1.23
PDGFRB-207ENST00000520579 MIAQ16674 131 aa7.4□□□□□ -1.23
PDGFRB-207ENST00000520579 ABCA2Q9BZC7 2435 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 UPK3BQ9BT76 320 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 TRBV7-6A0A0J9YX20 115 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 HILS1P60008 231 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 C11orf45Q8TAV5 145 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 EPG5Q9HCE0 2579 aa7.39□□□□□ -1.23
PDGFRB-207ENST00000520579 IGHV1-58A0A0C4DH39 117 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms