RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 KRTAP10-11P60412 298 aa10.53□□□□□ -0.72
VCAN-211ENST00000513984 RNASE13Q5GAN3 156 aaKnown RBP10.53□□□□□ -0.72
VCAN-211ENST00000513984 ORAOV1Q8WV07 137 aa10.53□□□□□ -0.72
VCAN-211ENST00000513984 SMAGPQ0VAQ4 97 aa10.52□□□□□ -0.73
VCAN-211ENST00000513984 NBEAL2Q6ZNJ1 2754 aa10.52□□□□□ -0.73
VCAN-211ENST00000513984 TINCRA0A1B0GVN0 87 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 ZNF25P17030 456 aaPredicted RBP10.51□□□□□ -0.73
VCAN-211ENST00000513984 DGAT2L7PQ6IED9 249 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 TMEM243Q9BU79 118 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 CMYA5Q8N3K9 4069 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 ZNF815PA8K554 130 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 A8MZ25 164 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 H7C423 109 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 TAL2Q16559 108 aa10.51□□□□□ -0.73
VCAN-211ENST00000513984 UBE2D1P51668 147 aa10.5□□□□□ -0.73
VCAN-211ENST00000513984 TSPEAR-AS2P59090 65 aa10.5□□□□□ -0.73
VCAN-211ENST00000513984 PRO0255Q9UI72 69 aa10.5□□□□□ -0.73
VCAN-211ENST00000513984 TAX1BP3O14907 124 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 LEPROTO15243 131 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 DEFB4AO15263 64 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 COX11Q9Y6N1 276 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 A6NDN8 102 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 J3QQQ9 107 aa10.49□□□□□ -0.73
VCAN-211ENST00000513984 MAST4O15021 2626 aa10.48□□□□□ -0.73
VCAN-211ENST00000513984 TRBV6-8A0A0A6YYG3 113 aa10.48□□□□□ -0.73
VCAN-211ENST00000513984 UBE2L6O14933 153 aa10.48□□□□□ -0.73
VCAN-211ENST00000513984 FAM19A3Q7Z5A8 133 aa10.48□□□□□ -0.73
VCAN-211ENST00000513984 TM2D2Q9BX73 214 aa10.48□□□□□ -0.73
VCAN-211ENST00000513984 GYPEP15421 78 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 TIRAPP58753 221 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 DAD1P61803 113 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 Q6ZVH6 145 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 CEND1Q8N111 149 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 OR5A1Q8NGJ0 315 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 CDC42SE2Q9NRR3 84 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 CELA1Q9UNI1 258 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 IGLV5-45A0A087WSX0 123 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 LGALS3P17931 250 aaKnown RBP10.47□□□□□ -0.73
VCAN-211ENST00000513984 GCSHP23434 173 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 PLEKHB2Q96CS7 222 aa10.47□□□□□ -0.73
VCAN-211ENST00000513984 FXYD2P54710 66 aa10.46□□□□□ -0.74
VCAN-211ENST00000513984 AMMECR1LQ6DCA0 310 aa10.46□□□□□ -0.74
VCAN-211ENST00000513984 ATP6V0E2Q8NHE4 81 aa10.46□□□□□ -0.74
VCAN-211ENST00000513984 SPART-AS1P0CW21 52 aa10.45□□□□□ -0.74
VCAN-211ENST00000513984 SCGB1D4Q6XE38 83 aa10.45□□□□□ -0.74
VCAN-211ENST00000513984 TMEM101Q96IK0 257 aa10.45□□□□□ -0.74
VCAN-211ENST00000513984 HIST1H4GQ99525 98 aa10.45□□□□□ -0.74
VCAN-211ENST00000513984 GEMIN7Q9H840 131 aaKnown RBP10.45□□□□□ -0.74
VCAN-211ENST00000513984 PAX4O43316 350 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 IGHV3-30-3P0DP02 117 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 LINC00469Q8N7U9 141 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 IGHV1-58A0A0C4DH39 117 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 A0A0J9YY99 117 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 H3BRM9 83 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 ATP5G1P05496 136 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 LINC00242Q5T6M2 205 aa10.44□□□□□ -0.74
VCAN-211ENST00000513984 IGHV3-64A0A075B6Q5 118 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 TEX48A0A1B0GUV7 120 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 K7EP13 123 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 HERVK_113P63121 156 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 VSIG2Q96IQ7 327 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 PKD1L1Q8TDX9 2849 aa10.43□□□□□ -0.74
VCAN-211ENST00000513984 TRAV8-3A0A0A6YYJ7 113 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 G3V4G9 280 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 GAGE6Q13070 117 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 SPANXB1Q9NS25 103 aaPredicted RBP10.42□□□□□ -0.74
VCAN-211ENST00000513984 CDKN2A-AS1Q9UH64 79 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 DNAH3Q8TD57 4116 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 PTTG1IPP53801 180 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 COX6A2Q02221 97 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 CHCHD5Q9BSY4 110 aa10.42□□□□□ -0.74
VCAN-211ENST00000513984 COL6A5A8TX70 2615 aa10.41□□□□□ -0.74
VCAN-211ENST00000513984 SPINK8P0C7L1 97 aa10.41□□□□□ -0.74
VCAN-211ENST00000513984 SAMD5Q5TGI4 173 aa10.41□□□□□ -0.74
VCAN-211ENST00000513984 TRAV13-1A0A0B4J241 112 aa10.4□□□□□ -0.74
VCAN-211ENST00000513984 IGLV4-60A0A075B6I1 120 aa10.4□□□□□ -0.75
VCAN-211ENST00000513984 SMIM13P0DJ93 91 aa10.4□□□□□ -0.75
VCAN-211ENST00000513984 TRAV26-1A0A087WT03 109 aa10.39□□□□□ -0.75
VCAN-211ENST00000513984 C9orf118A6NHY6 69 aa10.39□□□□□ -0.75
VCAN-211ENST00000513984 C10orf126Q8N4M7 172 aa10.39□□□□□ -0.75
VCAN-211ENST00000513984 RETNQ9HD89 108 aa10.39□□□□□ -0.75
VCAN-211ENST00000513984 NHP2Q9NX24 153 aaKnown RBP10.39□□□□□ -0.75
VCAN-211ENST00000513984 SRSF9Q13242 221 aaKnown RBP eCLIP10.38□□□□□ -0.75
VCAN-211ENST00000513984 IGLV5-39A0A0G2JS06 123 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 A0A1B0GWB2 263 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 F5H768 121 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 ZFAND6Q6FIF0 208 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 C11orf68Q9H3H3 251 aaKnown RBP10.37□□□□□ -0.75
VCAN-211ENST00000513984 A0A096LPF7 62 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 A0A1B0GUV1 79 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 NDUFA12Q9UI09 145 aa10.37□□□□□ -0.75
VCAN-211ENST00000513984 A0A0J9YXY3 114 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 SMIM1B2RUZ4 78 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 IGHV3-30P01768 117 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 IGHV3-30-5P0DP03 117 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 C12orf74Q32Q52 190 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 RAB37Q96AX2 223 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 ANK2Q01484 3957 aa10.36□□□□□ -0.75
VCAN-211ENST00000513984 TMEM238LA0A1B0GVL6 79 aa10.35□□□□□ -0.75
VCAN-211ENST00000513984 A6NJY4 79 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms