RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNF295-AS1Q8N0V1 137 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 XAGE1AQ9HD64 81 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 LCTP09848 1927 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 H3BPC8 53 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 LINC00474Q9P2X8 69 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 CRYGDP07320 174 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 C7orf33Q8WU49 177 aa8.32□□□□□ -1.08
LIMCH1-217ENST00000512946 A0A087WVE0 104 aa8.31□□□□□ -1.08
LIMCH1-217ENST00000512946 IGIPA6NJ69 53 aa8.31□□□□□ -1.08
LIMCH1-217ENST00000512946 DEFB135Q30KP9 77 aa8.31□□□□□ -1.08
LIMCH1-217ENST00000512946 SPAG11AQ6PDA7 123 aa8.31□□□□□ -1.08
LIMCH1-217ENST00000512946 C1orf137Q5JT78 98 aa8.31□□□□□ -1.08
LIMCH1-217ENST00000512946 A0A096LNI7 61 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 LINC01548A6NM66 108 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 Q8N7P7 452 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 CHCHD7Q9BUK0 85 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 IGLV2-11P01706 119 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 C10orf25Q5T742 122 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 LINC00959A0A1B0GUT2 108 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 PLXNA4Q9HCM2 1894 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 ATRXP46100 2492 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 LRCOL1A6NCL2 159 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 IGHV4-38-2P0DP08 117 aa8.3□□□□□ -1.08
LIMCH1-217ENST00000512946 C8orf87E5RJ46 101 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 H0Y9P7 68 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 IGHV4-61A0A0C4DH41 118 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 EGFEM1PQ0D2K5 195 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 POM121L12Q8N7R1 296 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 DNAH12Q6ZR08 3092 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 ODF3BA8MYP8 253 aa8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 TNFRSF13BO14836 293 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 DAZAP2Q15038 168 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-217ENST00000512946 HCG22E2RYF7 251 aa8.28□□□□□ -1.08
LIMCH1-217ENST00000512946 LELP1Q5T871 98 aa8.28□□□□□ -1.08
LIMCH1-217ENST00000512946 C11orf45Q8TAV5 145 aa8.28□□□□□ -1.08
LIMCH1-217ENST00000512946 CDIP1Q9H305 208 aa8.28□□□□□ -1.08
LIMCH1-217ENST00000512946 MKI67P46013 3256 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-217ENST00000512946 ACACAQ13085 2346 aa8.27□□□□□ -1.08
LIMCH1-217ENST00000512946 KLLNB2CW77 178 aa8.27□□□□□ -1.09
LIMCH1-217ENST00000512946 DYSFO75923 2080 aa8.27□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC01547P58512 204 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-217ENST00000512946 BEAN1Q3B7T3 259 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC01561Q8N1V8 128 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 CNOT1A5YKK6 2376 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 BRCA2P51587 3418 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 RNASE3P12724 160 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 BRWD1-AS2P59051 145 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 DEFB113Q30KQ7 82 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 CDC42SE2Q9NRR3 84 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 LTBP1Q14766 1721 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 DEFB114Q30KQ6 69 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 IGF2-ASQ6U949 168 aa8.26□□□□□ -1.09
LIMCH1-217ENST00000512946 LY6G6EA0A0G2JKS1 128 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC00310P59036 64 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 MAPK1IP1LQ8NDC0 245 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 DCANP1Q8TF63 244 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 TP53AIP1Q9HCN2 124 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 U3KQA8 63 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 SIPA1L1O43166 1804 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 FBXL19-AS1Q494R0 122 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 PLXNA3P51805 1871 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 DEFB1P60022 68 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 SPINK6Q6UWN8 80 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 TNCP24821 2201 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 NLRC5Q86WI3 1866 aa8.25□□□□□ -1.09
LIMCH1-217ENST00000512946 HILS1P60008 231 aa8.24□□□□□ -1.09
LIMCH1-217ENST00000512946 THADAQ6YHU6 1953 aa8.24□□□□□ -1.09
LIMCH1-217ENST00000512946 NCKAP5O14513 1909 aa8.24□□□□□ -1.09
LIMCH1-217ENST00000512946 RETNLBQ9BQ08 111 aa8.24□□□□□ -1.09
LIMCH1-217ENST00000512946 CYP4F30PQ9H0H9 118 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 CRIP2P52943 208 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 CD164Q04900 197 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 SPRNQ5BIV9 151 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC00242Q5T6M2 205 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 IGKV2-28A0A075B6P5 120 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 IGKV2D-28P01615 120 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC00846Q9NV44 126 aa8.23□□□□□ -1.09
LIMCH1-217ENST00000512946 DSCAML1Q8TD84 2053 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 A0A1B0GU69 56 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 SMIM1B2RUZ4 78 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 SBF1O95248 1867 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 COX8CQ7Z4L0 72 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 MED13Q9UHV7 2174 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 LINC00575Q6W349 94 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 PRM2P04554 102 aa8.22□□□□□ -1.09
LIMCH1-217ENST00000512946 DEFB131BA0A096LNP1 70 aa8.21□□□□□ -1.1
LIMCH1-217ENST00000512946 ZNF702PQ9H963 129 aa8.21□□□□□ -1.1
LIMCH1-217ENST00000512946 TET1Q8NFU7 2136 aa8.21□□□□□ -1.1
LIMCH1-217ENST00000512946 IGHV4-30-4P0DP06 118 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 IGHV4-31P0DP07 118 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 PRR14LQ5THK1 2151 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 ACYP2P14621 99 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 URB1-AS1Q96HZ7 61 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 AMELXQ99217 191 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 C1orf64Q8NEQ6 169 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 PSMG3-AS1Q96PY0 264 aa8.2□□□□□ -1.1
LIMCH1-217ENST00000512946 ANK1P16157 1881 aa8.19□□□□□ -1.1
LIMCH1-217ENST00000512946 TRAV10A0A0B4J240 114 aa8.19□□□□□ -1.1
LIMCH1-217ENST00000512946 A0A087WYN8 130 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms