RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 LST1O00453 97 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 MRPL23Q16540 153 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 ZNF580Q9UK33 172 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 AGRNO00468 2067 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 HAMPP81172 84 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 PIK3CD-AS1Q5SR53 167 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 POM121L12Q8N7R1 296 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 H7C423 109 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 BRI3O95415 125 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 C18orf65Q6ZTR6 163 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 ZNF702PQ9H963 129 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 IGLV10-54A0A075B6I4 117 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 CITED2Q99967 270 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 TMEM126AQ9H061 195 aa6.16□□□□□ -1.42
LIMCH1-216ENST00000512820 ATOX1O00244 68 aa6.15□□□□□ -1.42
LIMCH1-216ENST00000512820 ATP5G1P05496 136 aa6.15□□□□□ -1.42
LIMCH1-216ENST00000512820 C14orf132Q9NPU4 83 aa6.15□□□□□ -1.42
LIMCH1-216ENST00000512820 A0A1B0GX51 115 aa6.15□□□□□ -1.43
LIMCH1-216ENST00000512820 IGHV4-31P0DP07 118 aa6.15□□□□□ -1.43
LIMCH1-216ENST00000512820 LINC00315P59091 139 aa6.15□□□□□ -1.43
LIMCH1-216ENST00000512820 ZNF561-AS1K7EIQ3 104 aa6.15□□□□□ -1.43
LIMCH1-216ENST00000512820 ADAMTSL4-AS1Q5T5F5 129 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 Q6ZSV7 163 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 DSCR8Q96T75 97 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 PRO0461Q9UI25 63 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 DNAH14Q0VDD8 3507 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 CLUHP3Q96NS8 147 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 CDIP1Q9H305 208 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 AMELXQ99217 191 aa6.14□□□□□ -1.43
LIMCH1-216ENST00000512820 SMCPP49901 116 aaPredicted RBP6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 ESM1Q9NQ30 184 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 PRUNE2Q8WUY3 3088 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 CHCHD7Q9BUK0 85 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 HIVEP3Q5T1R4 2406 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 APOC4P55056 127 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 FAM19A4Q96LR4 140 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 CCDC168Q8NDH2 2452 aa6.13□□□□□ -1.43
LIMCH1-216ENST00000512820 NOTCH2Q04721 2471 aa6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 DNAJC9-AS1A6NH13 148 aa6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 CCDC179H3BU77 68 aa6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 USP9YO00507 2555 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 LINC00242Q5T6M2 205 aa6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 CFAP54Q96N23 3096 aa6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 USP9XQ93008 2570 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-216ENST00000512820 RBMY1FQ15415 496 aaKnown RBP6.11□□□□□ -1.43
LIMCH1-216ENST00000512820 JMJD7-PLA2G4BH0Y9G9 81 aa6.11□□□□□ -1.43
LIMCH1-216ENST00000512820 NDUFA7O95182 113 aa6.11□□□□□ -1.43
LIMCH1-216ENST00000512820 TRIOO75962 3097 aa6.11□□□□□ -1.43
LIMCH1-216ENST00000512820 IBA57-AS1B1ANH7 110 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 NCR3O14931 201 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 Q6ZSN1 163 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 SONP18583 2426 aaKnown RBP6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 SDIM1Q6ZPB5 146 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 PIEZO1Q92508 2521 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 TRBV6-8A0A0A6YYG3 113 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 SLPIP03973 132 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 COX6A2Q02221 97 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 Q6Q795 121 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 TRBV6-4A0A1B0GX49 114 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 PRO0255Q9UI72 69 aa6.1□□□□□ -1.43
LIMCH1-216ENST00000512820 CDC42SE2Q9NRR3 84 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 LOC100131303A0A0U1RQF7 123 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 DEFB4AO15263 64 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 CXCL5P42830 114 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 SMIM1B2RUZ4 78 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 TMEM256-PLSCR3K7ERE1 68 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 UQCRQO14949 82 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 FAM222AQ5U5X8 452 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 KLK9Q2XQG4 91 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 CITED1Q99966 193 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 IMUPQ9GZP8 106 aa6.09□□□□□ -1.43
LIMCH1-216ENST00000512820 FAM240AA0A1B0GVK7 77 aa6.08□□□□□ -1.44
LIMCH1-216ENST00000512820 LINC00694P0DN24 101 aa6.08□□□□□ -1.44
LIMCH1-216ENST00000512820 M0QXV9 152 aa6.08□□□□□ -1.44
LIMCH1-216ENST00000512820 SPAG11BQ08648 103 aa6.08□□□□□ -1.44
LIMCH1-216ENST00000512820 ODF3L2Q3SX64 289 aa6.08□□□□□ -1.44
LIMCH1-216ENST00000512820 LINC00269Q8N2A0 174 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 C3orf22Q8N5N4 141 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 XIRP2A4UGR9 3374 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 J3KT08 172 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 DEFB135Q30KP9 77 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 NKAPP1Q8N9T2 125 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 TLN2Q9Y4G6 2542 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 HIVEP2P31629 2446 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 SMIM11BQ8TCY0 68 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 DPH3Q96FX2 82 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 WFDC10AQ9H1F0 79 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 CHD8Q9HCK8 2581 aa6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 RBM3P98179 157 aaKnown RBP6.07□□□□□ -1.44
LIMCH1-216ENST00000512820 LRRC75A-AS1Q8N1F1 130 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 SPART-AS1P0CW21 52 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 C9orf66Q5T8R8 295 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 BEAN1Q3B7T3 259 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 WFDC11Q8NEX6 87 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 CAMK2N2Q96S95 79 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 KLK12Q9UKR0 248 aa6.06□□□□□ -1.44
LIMCH1-216ENST00000512820 hADV29S1A0JD25 119 aa6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 C1orf158Q8N1D5 194 aa6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 COL27A1Q8IZC6 1860 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 SZT2Q5T011 3432 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms