RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TET1Q8NFU7 2136 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 NCOR2Q9Y618 2525 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 PCDH15Q96QU1 1955 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 IGHV4-30-2A0A087WSY4 118 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 A0A087WVE0 104 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 LINC01548A6NM66 108 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 TSHBP01222 138 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 SYCNQ0VAF6 134 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 Q6ZRU5 148 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 C6orf223Q8N319 242 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 C2orf48Q96LS8 159 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 Q9BRP9 147 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 C6orf48Q9UBA6 75 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 E7EUB6 86 aa2.61□□□□□ -1.99
USP53-205ENST00000509769 NUP210Q8TEM1 1887 aaPredicted RBP2.61□□□□□ -1.99
USP53-205ENST00000509769 PLXND1Q9Y4D7 1925 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 SEC61BP60468 96 aaKnown RBP2.6□□□□□ -1.99
USP53-205ENST00000509769 FAM27E3Q08E93 113 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 MIR22HGQ0VDD5 57 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 KPRPQ5T749 579 aaPredicted RBP2.6□□□□□ -1.99
USP53-205ENST00000509769 ADAMTS9Q9P2N4 1935 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 TPRP12270 2363 aaKnown RBP2.6□□□□□ -1.99
USP53-205ENST00000509769 CACNA1CQ13936 2221 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 IGHV4-38-2P0DP08 117 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 Q8N9W7 124 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 RBM12B-AS1Q9P1G2 102 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 SLPIP03973 132 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 C22orf34Q6ZV56 151 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 POM121L12Q8N7R1 296 aa2.6□□□□□ -1.99
USP53-205ENST00000509769 TNRC6BQ9UPQ9 1833 aaKnown RBP2.6□□□□□ -1.99
USP53-205ENST00000509769 IGLV2-23P01705 113 aa2.59□□□□□ -1.99
USP53-205ENST00000509769 CDSNQ15517 529 aa2.59□□□□□ -1.99
USP53-205ENST00000509769 RSPO1Q2MKA7 263 aaPredicted RBP2.59□□□□□ -1.99
USP53-205ENST00000509769 Q8N2B8 174 aa2.59□□□□□ -1.99
USP53-205ENST00000509769 C7orf33Q8WU49 177 aa2.59□□□□□ -1.99
USP53-205ENST00000509769 LINC00310P59036 64 aa2.59□□□□□ -1.99
USP53-205ENST00000509769 C2orf16Q68DN1 1984 aa2.59□□□□□ -2
USP53-205ENST00000509769 DOCK4Q8N1I0 1966 aa2.59□□□□□ -2
USP53-205ENST00000509769 ZNF106Q9H2Y7 1883 aaKnown RBP2.59□□□□□ -2
USP53-205ENST00000509769 IGKV1D-37A0A075B6S9 117 aa2.59□□□□□ -2
USP53-205ENST00000509769 Q75L30 129 aa2.59□□□□□ -2
USP53-205ENST00000509769 EPG5Q9HCE0 2579 aa2.59□□□□□ -2
USP53-205ENST00000509769 RIF1Q5UIP0 2472 aaKnown RBP2.59□□□□□ -2
USP53-205ENST00000509769 GON4LQ3T8J9 2241 aa2.58□□□□□ -2
USP53-205ENST00000509769 THADAQ6YHU6 1953 aa2.58□□□□□ -2
USP53-205ENST00000509769 BRI3O95415 125 aa2.58□□□□□ -2
USP53-205ENST00000509769 C11orf71Q6IPW1 123 aa2.58□□□□□ -2
USP53-205ENST00000509769 USP24Q9UPU5 2620 aa2.58□□□□□ -2
USP53-205ENST00000509769 ANK1P16157 1881 aa2.58□□□□□ -2
USP53-205ENST00000509769 IGHV7-81A0A0B4J1V7 117 aa2.58□□□□□ -2
USP53-205ENST00000509769 LELP1Q5T871 98 aa2.58□□□□□ -2
USP53-205ENST00000509769 COA5Q86WW8 74 aa2.58□□□□□ -2
USP53-205ENST00000509769 KIF26BQ2KJY2 2108 aa2.58□□□□□ -2
USP53-205ENST00000509769 E7EQL1 145 aa2.58□□□□□ -2
USP53-205ENST00000509769 FHL2Q14192 279 aa2.58□□□□□ -2
USP53-205ENST00000509769 Q6ZQT0 140 aa2.58□□□□□ -2
USP53-205ENST00000509769 DOCK9Q9BZ29 2069 aa2.58□□□□□ -2
USP53-205ENST00000509769 KLLNB2CW77 178 aa2.58□□□□□ -2
USP53-205ENST00000509769 FRMD6-AS1P0C7T7 363 aa2.58□□□□□ -2
USP53-205ENST00000509769 CHTF8P0CG12 524 aa2.58□□□□□ -2
USP53-205ENST00000509769 Q6ZS46 218 aa2.58□□□□□ -2
USP53-205ENST00000509769 Q8NA96 180 aa2.58□□□□□ -2
USP53-205ENST00000509769 CDC42SE2Q9NRR3 84 aa2.58□□□□□ -2
USP53-205ENST00000509769 LINC00959A0A1B0GUT2 108 aa2.57□□□□□ -2
USP53-205ENST00000509769 LRCOL1A6NCL2 159 aa2.57□□□□□ -2
USP53-205ENST00000509769 SMIM1B2RUZ4 78 aa2.57□□□□□ -2
USP53-205ENST00000509769 IGLV2-11P01706 119 aa2.57□□□□□ -2
USP53-205ENST00000509769 TFF1P04155 84 aa2.57□□□□□ -2
USP53-205ENST00000509769 IGLV7-43P04211 117 aa2.57□□□□□ -2
USP53-205ENST00000509769 SMCPP49901 116 aaPredicted RBP2.57□□□□□ -2
USP53-205ENST00000509769 LY6G6EA0A0G2JKS1 128 aa2.57□□□□□ -2
USP53-205ENST00000509769 A8MUN3 132 aa2.57□□□□□ -2
USP53-205ENST00000509769 LY6LH3BQJ8 138 aa2.57□□□□□ -2
USP53-205ENST00000509769 H7BZZ5 65 aa2.57□□□□□ -2
USP53-205ENST00000509769 K7EQG2 157 aa2.57□□□□□ -2
USP53-205ENST00000509769 LINC01560Q8TB33 94 aa2.57□□□□□ -2
USP53-205ENST00000509769 ZNF580Q9UK33 172 aa2.57□□□□□ -2
USP53-205ENST00000509769 DOCK6Q96HP0 2047 aa2.57□□□□□ -2
USP53-205ENST00000509769 BRWD1Q9NSI6 2320 aa2.57□□□□□ -2
USP53-205ENST00000509769 PTPRBP23467 1997 aa2.57□□□□□ -2
USP53-205ENST00000509769 LRRK1Q38SD2 2015 aa2.57□□□□□ -2
USP53-205ENST00000509769 IGLV5-39A0A0G2JS06 123 aa2.57□□□□□ -2
USP53-205ENST00000509769 A0A1B0GUV1 79 aa2.57□□□□□ -2
USP53-205ENST00000509769 FAM229AH3BQW9 127 aa2.57□□□□□ -2
USP53-205ENST00000509769 DAZAP2Q15038 168 aaPredicted RBP2.57□□□□□ -2
USP53-205ENST00000509769 SMIM29Q86T20 159 aa2.57□□□□□ -2
USP53-205ENST00000509769 A0A087WYN8 130 aa2.57□□□□□ -2
USP53-205ENST00000509769 TRBV7-4A0A0J9YYF1 115 aa2.57□□□□□ -2
USP53-205ENST00000509769 RPL37AP61513 92 aaKnown RBP2.57□□□□□ -2
USP53-205ENST00000509769 FBXL19-AS1Q494R0 122 aa2.57□□□□□ -2
USP53-205ENST00000509769 REG3GQ6UW15 175 aa2.57□□□□□ -2
USP53-205ENST00000509769 IGFL3Q6UXB1 125 aa2.57□□□□□ -2
USP53-205ENST00000509769 ODF3L1Q8IXM7 274 aa2.57□□□□□ -2
USP53-205ENST00000509769 URB1-AS1Q96HZ7 61 aa2.57□□□□□ -2
USP53-205ENST00000509769 VWA8A3KMH1 1905 aa2.57□□□□□ -2
USP53-205ENST00000509769 TRPM6Q9BX84 2022 aa2.57□□□□□ -2
USP53-205ENST00000509769 ARID1AO14497 2285 aa2.57□□□□□ -2
USP53-205ENST00000509769 IGLV5-45A0A087WSX0 123 aa2.56□□□□□ -2
USP53-205ENST00000509769 ZNF581Q9P0T4 197 aa2.56□□□□□ -2
USP53-205ENST00000509769 LCTP09848 1927 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms