RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 C20orf78Q9BR46 151 aa5.78□□□□□ -1.48
SCN1A-207ENST00000507401 NAA38Q9BRA0 125 aaKnown RBP5.78□□□□□ -1.48
SCN1A-207ENST00000507401 IMUPQ9GZP8 106 aa5.78□□□□□ -1.48
SCN1A-207ENST00000507401 DKK2Q9UBU2 259 aa5.78□□□□□ -1.48
SCN1A-207ENST00000507401 IGHV4-28A0A0C4DH34 117 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 DEFB4AO15263 64 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 MT-ATP8P03928 68 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 IGLC6P0CF74 106 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 HLA-DMBP28068 263 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 RPL13AP40429 203 aaKnown RBP5.77□□□□□ -1.49
SCN1A-207ENST00000507401 LEPP41159 167 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 XGP55808 180 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 LAGE3Q14657 143 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 LYZL1Q6UWQ5 148 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 SHANK2-AS3Q9BTD1 123 aa5.77□□□□□ -1.49
SCN1A-207ENST00000507401 TIMM8BQ9Y5J9 83 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-207ENST00000507401 LOC389332A0A1B0GUA5 103 aa5.76□□□□□ -1.49
SCN1A-207ENST00000507401 XCL2Q9UBD3 114 aa5.76□□□□□ -1.49
SCN1A-207ENST00000507401 TRAV10A0A0B4J240 114 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 A0A0J9YX75 114 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 RBAKDNA6NC62 111 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 PRSS29PA6NIE9 313 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 A8MTW9 85 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 B5MCH6 92 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 H3BRN7 92 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 J3KRW8 73 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 K7ERJ3 54 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 TNFRSF6BO95407 300 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 ACYP1P07311 99 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 P0DMU3 169 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 FAM231AP0DMU4 169 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 FAM231CP0DMU5 169 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 RPL7P18124 248 aaKnown RBP5.75□□□□□ -1.49
SCN1A-207ENST00000507401 C16orf92Q96LL3 132 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 C17orf77Q96MU5 243 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 APLNQ9ULZ1 77 aa5.75□□□□□ -1.49
SCN1A-207ENST00000507401 IGHV4-4A0A075B6R2 117 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 IGKV2D-26A0A0A0MRZ7 120 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-207ENST00000507401 SH2D1AO60880 128 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 DUSP14O95147 198 aaKnown RBP5.74□□□□□ -1.49
SCN1A-207ENST00000507401 SPART-AS1P0CW21 52 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 MDFICQ9P1T7 246 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 SS18L2Q9UHA2 77 aa5.74□□□□□ -1.49
SCN1A-207ENST00000507401 A0A1B0GX51 115 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 IGKV3-20P01619 116 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 PSMB2P49721 201 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 HERV-K104P63124 156 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 SRSF9Q13242 221 aaKnown RBP eCLIP5.73□□□□□ -1.49
SCN1A-207ENST00000507401 C5orf47Q569G3 176 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 TMEM78Q5T7P6 136 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 Q6ZTC4 211 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 NFE4Q86UQ8 179 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 C10orf126Q8N4M7 172 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 C18orf15Q96N68 181 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 SLC50A1Q9BRV3 221 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 MRPL35Q9NZE8 188 aaKnown RBP5.73□□□□□ -1.49
SCN1A-207ENST00000507401 VPS13DQ5THJ4 4388 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 BIRC6Q9NR09 4857 aa5.73□□□□□ -1.49
SCN1A-207ENST00000507401 KMT2AQ03164 3969 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 IGLV2-18A0A075B6J9 118 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 DEFB131BA0A096LNP1 70 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 TRAV8-2A0A0B4J237 113 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 LOC107984156A0A0G2JMH3 177 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 F6UB75 175 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 H3BT86 120 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 M0R381 172 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 CRIP1P50238 77 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 DEFB1P60022 68 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 ATXN8Q156A1 80 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 AMTNQ6UX39 209 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 SCGB1D4Q6XE38 83 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 ARL17AQ8IVW1 177 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 C1orf158Q8N1D5 194 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 MRPL53Q96EL3 112 aaKnown RBP5.72□□□□□ -1.49
SCN1A-207ENST00000507401 RNF185Q96GF1 192 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 DNAJC30Q96LL9 226 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 TPPP3Q9BW30 176 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 PRO1854Q9UHT4 67 aa5.72□□□□□ -1.49
SCN1A-207ENST00000507401 TRAV8-1A0A0A6YYK1 113 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 A0A0B4J2C4 111 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 TRBV7-7A0A0K0K1E9 115 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 MRPS12O15235 138 aaKnown RBP5.71□□□□□ -1.5
SCN1A-207ENST00000507401 SLC25A20O43772 301 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 FXYD7P58549 80 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 RPS28P62857 69 aaKnown RBP5.71□□□□□ -1.5
SCN1A-207ENST00000507401 TOMM6Q96B49 74 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 CARD19Q96LW7 228 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 CELA1Q9UNI1 258 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 LENEPQ9Y5L5 61 aa5.71□□□□□ -1.5
SCN1A-207ENST00000507401 IGHV3OR16-12A0A075B7B8 117 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 TRAV8-4A0A0B4J246 113 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 ZNF815PA8K554 130 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 TMEM170BQ5T4T1 132 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 EXOC3-AS1Q8N2X6 119 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 SMIM20Q8N5G0 67 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 ANKRD29Q8N6D5 301 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 PTH2Q96A98 100 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 TMEM141Q96I45 108 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms