RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 SEC11AP67812 179 aa5.69□□□□□ -1.5
PDGFC-205ENST00000506880 PRSS3P2Q8NHM4 247 aa5.69□□□□□ -1.5
PDGFC-205ENST00000506880 TIMM17AQ99595 171 aa5.69□□□□□ -1.5
PDGFC-205ENST00000506880 AP5S1Q9NUS5 200 aa5.69□□□□□ -1.5
PDGFC-205ENST00000506880 TGIF2-C20orf24A0A0A6YYL0 155 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 C1orf196B1AJZ1 125 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 SMKR1H3BMG3 65 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 RTL8CO15255 209 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 PSCAO43653 123 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 IGHV3-30P01768 117 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 IGHV3-33P01772 117 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 IGHV3-30-3P0DP02 117 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 IGHV3-30-5P0DP03 117 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 REG3AQ06141 175 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 CFAP161Q6P656 301 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 FA2HQ7L5A8 372 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 ZNF664Q8N3J9 261 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 CHCHD1Q96BP2 118 aaKnown RBP5.68□□□□□ -1.5
PDGFC-205ENST00000506880 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 KRTAP1-5Q9BYS1 174 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 CDC42SE2Q9NRR3 84 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 PGPEP1Q9NXJ5 209 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 KLK12Q9UKR0 248 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 PKIGQ9Y2B9 76 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 UBE2D4Q9Y2X8 147 aa5.68□□□□□ -1.5
PDGFC-205ENST00000506880 PRSS29PA6NIE9 313 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 F8WDY8 70 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 GAS8-AS1O95177 125 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 GAGE6Q13070 117 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 SS18Q15532 418 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 RNASEKQ6P5S7 137 aaKnown RBP5.67□□□□□ -1.5
PDGFC-205ENST00000506880 Q6ZN92 141 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 LINC01561Q8N1V8 128 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 Q8N976 141 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 UBE2WQ96B02 151 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 TOMM6Q96B49 74 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 FRAS1Q86XX4 4008 aa5.67□□□□□ -1.5
PDGFC-205ENST00000506880 COLCA2A8K830 154 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 M0R2N4 97 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 LINC00614P0C842 121 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 ENHOQ6UWT2 76 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 ERASQ7Z444 233 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 LINC00269Q8N2A0 174 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 C18orf32Q8TCD1 76 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 PACRGQ96M98 296 aaPredicted RBP5.66□□□□□ -1.5
PDGFC-205ENST00000506880 C2orf88Q9BSF0 95 aa5.66□□□□□ -1.5
PDGFC-205ENST00000506880 C2orf66Q6UXQ4 117 aa5.65□□□□□ -1.5
PDGFC-205ENST00000506880 FAM19A3Q7Z5A8 133 aa5.65□□□□□ -1.5
PDGFC-205ENST00000506880 CBLN2Q8IUK8 224 aa5.65□□□□□ -1.5
PDGFC-205ENST00000506880 IGLV4-60A0A075B6I1 120 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 IGKV2D-24A0A075B6R9 120 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.64□□□□□ -1.51
PDGFC-205ENST00000506880 IGKV2-29A2NJV5 120 aaPredicted RBP5.64□□□□□ -1.51
PDGFC-205ENST00000506880 IGIPA6NJ69 53 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 ATP5LO75964 103 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 HBDP02042 147 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 KIAA1644Q3SXP7 199 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 CD164L2Q6UWJ8 174 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 TEX43Q6ZNM6 134 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 AMELXQ99217 191 aa5.64□□□□□ -1.51
PDGFC-205ENST00000506880 RYR2Q92736 4967 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 A0A087WTM6 91 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 LOC389332A0A1B0GUA5 103 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 LINC00959A0A1B0GUT2 108 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 LRCOL1A6NCL2 159 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 APOMO95445 188 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 VCX2Q9H322 139 aa5.63□□□□□ -1.51
PDGFC-205ENST00000506880 A0A1B0GVY2 172 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.62□□□□□ -1.51
PDGFC-205ENST00000506880 ATP6V1G1O75348 118 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 TRGC2P03986 189 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 KRTAP26-1Q6PEX3 210 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 Q9HAA7 133 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 BIRC6Q9NR09 4857 aa5.62□□□□□ -1.51
PDGFC-205ENST00000506880 IGLV4-3A0A075B6K6 122 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 IGHV1-58A0A0C4DH39 117 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 AKR1D1P51857 326 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 RPL39P62891 51 aaKnown RBP5.61□□□□□ -1.51
PDGFC-205ENST00000506880 HERVK_113P63121 156 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 BAGE3Q86Y29 109 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 Q8N814 137 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 CHCHD10Q8WYQ3 142 aaPredicted RBP5.61□□□□□ -1.51
PDGFC-205ENST00000506880 SCGB3A1Q96QR1 104 aa5.61□□□□□ -1.51
PDGFC-205ENST00000506880 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.6□□□□□ -1.51
PDGFC-205ENST00000506880 IFITM10A6NMD0 228 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 COX7A2LO14548 114 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 HSBP1O75506 76 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 CNBPP62633 177 aaKnown RBP5.6□□□□□ -1.51
PDGFC-205ENST00000506880 TNP2Q05952 138 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 PMVKQ15126 192 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 COA6Q5JTJ3 125 aaKnown RBP5.6□□□□□ -1.51
PDGFC-205ENST00000506880 SFTA2Q6UW10 78 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 OR10D4PQ8NGN7 298 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 DNAH17Q9UFH2 4485 aa5.6□□□□□ -1.51
PDGFC-205ENST00000506880 DNAH10Q8IVF4 4471 aa5.59□□□□□ -1.51
PDGFC-205ENST00000506880 HECTD4Q9Y4D8 3996 aa5.59□□□□□ -1.51
PDGFC-205ENST00000506880 HYDINQ4G0P3 5121 aa5.59□□□□□ -1.51
PDGFC-205ENST00000506880 GVQW2A0A096LPI5 108 aaPredicted RBP5.59□□□□□ -1.51
PDGFC-205ENST00000506880 TRAV12-1A0A0B4J245 112 aa5.59□□□□□ -1.51
PDGFC-205ENST00000506880 IGHV3OR16-9A0A0B4J2B5 98 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms