RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 IGHV4-38-2P0DP08 117 aa12.36□□□□□ -0.43
SQSTM1-211ENST00000506690 HIST1H4AP62805 103 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-211ENST00000506690 CSDC2Q9Y534 153 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-211ENST00000506690 ACACBO00763 2458 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 PIK3CD-AS1Q5SR53 167 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 FAM218AQ96MZ4 157 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 A0A1B0GX51 115 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 INAFM2P0DMQ5 153 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 HTN1P15515 57 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 LRRC75A-AS1Q8N1F1 130 aa12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 ZNF625Q96I27 306 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-211ENST00000506690 A0A0U1RRA0 63 aa12.34□□□□□ -0.43
SQSTM1-211ENST00000506690 LOC107984640A0A0U1RRK4 108 aa12.34□□□□□ -0.43
SQSTM1-211ENST00000506690 C19orf84I3L1E1 186 aa12.34□□□□□ -0.43
SQSTM1-211ENST00000506690 KLK5Q9Y337 293 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-211ENST00000506690 IGHV3OR16-12A0A075B7B8 117 aa12.33□□□□□ -0.43
SQSTM1-211ENST00000506690 CRYGAP11844 174 aa12.33□□□□□ -0.43
SQSTM1-211ENST00000506690 PSMB8P28062 276 aa12.33□□□□□ -0.43
SQSTM1-211ENST00000506690 SORL1Q92673 2214 aa12.33□□□□□ -0.44
SQSTM1-211ENST00000506690 IGHV3-38A0A0C4DH36 116 aa12.33□□□□□ -0.44
SQSTM1-211ENST00000506690 LINC00242Q5T6M2 205 aa12.33□□□□□ -0.44
SQSTM1-211ENST00000506690 J3KT08 172 aa12.32□□□□□ -0.44
SQSTM1-211ENST00000506690 SMIM1B2RUZ4 78 aa12.31□□□□□ -0.44
SQSTM1-211ENST00000506690 FAM19A3Q7Z5A8 133 aa12.31□□□□□ -0.44
SQSTM1-211ENST00000506690 IGHV3-53P01767 116 aa12.31□□□□□ -0.44
SQSTM1-211ENST00000506690 GAGE2AQ6NT46 116 aa12.31□□□□□ -0.44
SQSTM1-211ENST00000506690 ATOX1O00244 68 aa12.3□□□□□ -0.44
SQSTM1-211ENST00000506690 PRM2P04554 102 aa12.3□□□□□ -0.44
SQSTM1-211ENST00000506690 AKAP6Q13023 2319 aa12.3□□□□□ -0.44
SQSTM1-211ENST00000506690 VPS13CQ709C8 3753 aa12.3□□□□□ -0.44
SQSTM1-211ENST00000506690 DGAT2L7PQ6IED9 249 aa12.3□□□□□ -0.44
SQSTM1-211ENST00000506690 MALP21145 153 aa12.29□□□□□ -0.44
SQSTM1-211ENST00000506690 HIST2H2BCQ6DN03 193 aa12.29□□□□□ -0.44
SQSTM1-211ENST00000506690 HIST2H2BDQ6DRA6 164 aa12.29□□□□□ -0.44
SQSTM1-211ENST00000506690 PRIMA1Q86XR5 153 aa12.29□□□□□ -0.44
SQSTM1-211ENST00000506690 RPS28P62857 69 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-211ENST00000506690 ZNF415Q09FC8 603 aa12.28□□□□□ -0.44
SQSTM1-211ENST00000506690 A8MTW9 85 aa12.27□□□□□ -0.44
SQSTM1-211ENST00000506690 RPL28P46779 137 aaKnown RBP12.27□□□□□ -0.44
SQSTM1-211ENST00000506690 SYNJ2BPP57105 145 aa12.27□□□□□ -0.44
SQSTM1-211ENST00000506690 C10orf99Q6UWK7 81 aa12.27□□□□□ -0.44
SQSTM1-211ENST00000506690 Q9HAA7 133 aa12.27□□□□□ -0.44
SQSTM1-211ENST00000506690 FAM19A5Q7Z5A7 132 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-211ENST00000506690 PF4P02776 101 aa12.26□□□□□ -0.45
SQSTM1-211ENST00000506690 IGHV4-61A0A0C4DH41 118 aa12.26□□□□□ -0.45
SQSTM1-211ENST00000506690 C5orf47Q569G3 176 aa12.26□□□□□ -0.45
SQSTM1-211ENST00000506690 COL12A1Q99715 3063 aa12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 RBMY1BA6NDE4 496 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 RBMY1EA6NEQ0 496 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 F5H768 121 aa12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 RBMY1DP0C7P1 496 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 C11orf72Q8NBR9 251 aa12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 PIMREGQ9BSJ6 248 aa12.25□□□□□ -0.45
SQSTM1-211ENST00000506690 TRAV13-2A0A0B4J235 113 aa12.24□□□□□ -0.45
SQSTM1-211ENST00000506690 hADV29S1A0JD25 119 aa12.24□□□□□ -0.45
SQSTM1-211ENST00000506690 RPL18AQ02543 176 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-211ENST00000506690 SMIM9A6NGZ8 99 aa12.23□□□□□ -0.45
SQSTM1-211ENST00000506690 CYSTM1Q9H1C7 97 aa12.23□□□□□ -0.45
SQSTM1-211ENST00000506690 TMEM89A2RUT3 159 aa12.23□□□□□ -0.45
SQSTM1-211ENST00000506690 RS1O15537 224 aa12.23□□□□□ -0.45
SQSTM1-211ENST00000506690 HOXD3P31249 432 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-211ENST00000506690 IGSF10Q6WRI0 2623 aa12.22□□□□□ -0.45
SQSTM1-211ENST00000506690 USP24Q9UPU5 2620 aa12.22□□□□□ -0.45
SQSTM1-211ENST00000506690 DEFB131AP59861 70 aa12.22□□□□□ -0.45
SQSTM1-211ENST00000506690 OVOL2Q9BRP0 275 aa12.22□□□□□ -0.45
SQSTM1-211ENST00000506690 TRAV13-1A0A0B4J241 112 aa12.21□□□□□ -0.45
SQSTM1-211ENST00000506690 DNAL4O96015 105 aa12.21□□□□□ -0.45
SQSTM1-211ENST00000506690 C9orf129Q5T035 196 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-211ENST00000506690 LINC00337Q8N6G1 96 aa12.21□□□□□ -0.45
SQSTM1-211ENST00000506690 OBSCN-AS1Q96MR7 158 aa12.21□□□□□ -0.45
SQSTM1-211ENST00000506690 Q6JHZ5 121 aa12.21□□□□□ -0.46
SQSTM1-211ENST00000506690 CRPP02741 224 aa12.2□□□□□ -0.46
SQSTM1-211ENST00000506690 CFAP46Q8IYW2 2715 aa12.2□□□□□ -0.46
SQSTM1-211ENST00000506690 IGKV2-28A0A075B6P5 120 aa12.2□□□□□ -0.46
SQSTM1-211ENST00000506690 IGKV2D-28P01615 120 aa12.2□□□□□ -0.46
SQSTM1-211ENST00000506690 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 A0A087WYN8 130 aa12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 C14orf132Q9NPU4 83 aa12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 CRYBG3Q68DQ2 2970 aa12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 Q96MF0 132 aa12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 UPK3BQ9BT76 320 aa12.19□□□□□ -0.46
SQSTM1-211ENST00000506690 SERP2Q8N6R1 65 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 LINC00846Q9NV44 126 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 ZFYVE26Q68DK2 2539 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 ATP5J2P56134 94 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 TMEM258P61165 79 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 CDC42SE2Q9NRR3 84 aa12.18□□□□□ -0.46
SQSTM1-211ENST00000506690 IGKV3D-7A0A0C4DH55 119 aa12.17□□□□□ -0.46
SQSTM1-211ENST00000506690 NTM-AS1Q6ZSK4 140 aa12.17□□□□□ -0.46
SQSTM1-211ENST00000506690 SMIM11BQ8TCY0 68 aa12.17□□□□□ -0.46
SQSTM1-211ENST00000506690 PRB1P04280 392 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 C10orf105Q8TEF2 133 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 SND1-IT1Q9HBX3 110 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 AVPP01185 164 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 MIR7-3HGQ8N6C7 128 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 OR13C6PQ8NH95 151 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 DPH3Q96FX2 82 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 CCL19Q99731 98 aa12.16□□□□□ -0.46
SQSTM1-211ENST00000506690 LINC01561Q8N1V8 128 aa12.15□□□□□ -0.46
SQSTM1-211ENST00000506690 H0YGX0 51 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms