RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KLK9Q2XQG4 91 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 HILS1P60008 231 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 DOPEY2Q9Y3R5 2298 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 TLN1Q9Y490 2541 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 NCR3O14931 201 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 PRM2P04554 102 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 JMJD7-PLA2G4BH0Y9G9 81 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 FAM19A4Q96LR4 140 aa7.85□□□□□ -1.15
LIMCH1-205ENST00000503057 ODF3L2Q3SX64 289 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 ACACBO00763 2458 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 KRTAP10-9P60411 292 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 REG3AQ06141 175 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 UBE2D3P61077 147 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 UBE2D2P62837 147 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 LINC00269Q8N2A0 174 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 KLK12Q9UKR0 248 aa7.84□□□□□ -1.15
LIMCH1-205ENST00000503057 TRAV26-1A0A087WT03 109 aa7.83□□□□□ -1.16
LIMCH1-205ENST00000503057 RBMY1FQ15415 496 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-205ENST00000503057 A8MZ25 164 aa7.83□□□□□ -1.16
LIMCH1-205ENST00000503057 TRACP01848 142 aa7.83□□□□□ -1.16
LIMCH1-205ENST00000503057 CHCHD7Q9BUK0 85 aa7.83□□□□□ -1.16
LIMCH1-205ENST00000503057 NDUFA7O95182 113 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 TEX49A0A1B0GTD5 131 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 CDK2AP2O75956 126 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 MIFP14174 115 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 KIF25-AS1Q9Y6Z4 181 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 TMEM256-PLSCR3K7ERE1 68 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 CHCHD10Q8WYQ3 142 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 Q9HAA7 133 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 NACAE9PAV3 2078 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 AMELXQ99217 191 aa7.82□□□□□ -1.16
LIMCH1-205ENST00000503057 WFDC10AQ9H1F0 79 aa7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 DSCAML1Q8TD84 2053 aa7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 CDC42SE2Q9NRR3 84 aa7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 INAFM1C9JVW0 142 aa7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 RPL18AQ02543 176 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 BEAN1Q3B7T3 259 aa7.81□□□□□ -1.16
LIMCH1-205ENST00000503057 CCL18P55774 89 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 TSPEAR-AS2P59090 65 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 C16orf95Q9H693 158 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 LY6G6DO95868 133 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 SPATA25Q9BR10 227 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 LOC100131303A0A0U1RQF7 123 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 DIRC1Q969H9 104 aa7.8□□□□□ -1.16
LIMCH1-205ENST00000503057 Q8N2B8 174 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 PKIGQ9Y2B9 76 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 CSPG4Q6UVK1 2322 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 MT-ATP8P03928 68 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 LINC00643Q86TS7 51 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 KIR2DL5BQ8NHK3 375 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 FAM236AA0A1B0GUQ0 79 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 FAM236BA0A1B0GV22 79 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 ATOX1O00244 68 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 LST1O00453 97 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 LINC00482Q8N8I6 264 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 IGLV1-51P01701 117 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 C1orf158Q8N1D5 194 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 POM121L12Q8N7R1 296 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 CLUHP3Q96NS8 147 aa7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 BBC3Q96PG8 261 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-205ENST00000503057 TRANK1O15050 2925 aa7.78□□□□□ -1.16
LIMCH1-205ENST00000503057 LINC00242Q5T6M2 205 aa7.78□□□□□ -1.16
LIMCH1-205ENST00000503057 B5MCH6 92 aa7.78□□□□□ -1.16
LIMCH1-205ENST00000503057 MRAPQ8TCY5 172 aa7.78□□□□□ -1.16
LIMCH1-205ENST00000503057 CSDC2Q9Y534 153 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-205ENST00000503057 LINC00959A0A1B0GUT2 108 aa7.77□□□□□ -1.17
LIMCH1-205ENST00000503057 PLA2G2AP14555 144 aa7.77□□□□□ -1.17
LIMCH1-205ENST00000503057 IGHV4-28A0A0C4DH34 117 aa7.77□□□□□ -1.17
LIMCH1-205ENST00000503057 LINC00315P59091 139 aa7.77□□□□□ -1.17
LIMCH1-205ENST00000503057 C14orf132Q9NPU4 83 aa7.77□□□□□ -1.17
LIMCH1-205ENST00000503057 ETDCA0A1B0GVM5 59 aa7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 RBM3P98179 157 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 CD164L2Q6UWJ8 174 aa7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 NCOR2Q9Y618 2525 aa7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 IGKV3D-7A0A0C4DH55 119 aa7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 FAM110AQ9BQ89 295 aa7.76□□□□□ -1.17
LIMCH1-205ENST00000503057 SMIM1B2RUZ4 78 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 ATRXP46100 2492 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 PDE6GP18545 87 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 FUSP35637 526 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 Q6ZSN1 163 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 hADV29S1A0JD25 119 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 DEFB105AQ8NG35 78 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 HIVEP2P31629 2446 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 COX7BP24311 80 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 C11orf45Q8TAV5 145 aa7.75□□□□□ -1.17
LIMCH1-205ENST00000503057 COX6A2Q02221 97 aa7.74□□□□□ -1.17
LIMCH1-205ENST00000503057 BRCA2P51587 3418 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 NDUFV3P56181 108 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 COX17Q14061 63 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 Q8IZM0 81 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 SS18L2Q9UHA2 77 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 LELP1Q5T871 98 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 LINC00694P0DN24 101 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 UBE2BP63146 152 aa7.73□□□□□ -1.17
LIMCH1-205ENST00000503057 A0A1B0GX51 115 aa7.72□□□□□ -1.17
LIMCH1-205ENST00000503057 HIGD2BQ4VC39 106 aa7.72□□□□□ -1.17
LIMCH1-205ENST00000503057 C11orf72Q8NBR9 251 aa7.72□□□□□ -1.17
LIMCH1-205ENST00000503057 FHL2Q14192 279 aa7.72□□□□□ -1.17
LIMCH1-205ENST00000503057 NAV2Q8IVL1 2488 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms