RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 H3BMM0 161 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 M0QXV9 152 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PSMB2P49721 201 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 TENM1Q9UKZ4 2725 aa11.73□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 EIF4EBP3O60516 100 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 HTN1P15515 57 aa11.73□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 WIPF1O43516 503 aa11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 CITED2Q99967 270 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 Q9UF83 564 aa11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 IGHV3-64A0A075B6Q5 118 aa11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 C10orf126Q8N4M7 172 aa11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PYGO1Q9Y3Y4 419 aa11.72□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PPDPFQ9H3Y8 114 aa11.71□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 FBN1P35555 2871 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 TCL1BO95988 128 aa11.71□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 Q6ZSN1 163 aa11.71□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 SBSPONQ8IVN8 264 aa11.71□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 SNCGO76070 127 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 Q8N2B8 174 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 PRO1854Q9UHT4 67 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 A4D1N5 150 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 M0R2P5 195 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 LYRM7Q5U5X0 104 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 HIST2H2BDQ6DRA6 164 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 CEMP1Q6PRD7 247 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TMEM61Q8N0U2 210 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 DUX3Q96PT4 197 aa11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 CSDC2Q9Y534 153 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TRAV2A0A0B4J234 112 aa11.69□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 CD28P10747 220 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 MRPS36P82909 103 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 ESM1Q9NQ30 184 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TRBV20-1A0A075B6N2 111 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 A8MWV9 139 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 MUSTN1Q8IVN3 82 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TMEM263Q8WUH6 116 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 CHCHD7Q9BUK0 85 aa11.68□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 MEIG1Q5JSS6 88 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 PIK3CD-AS1Q5SR53 167 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 MAP6D1Q9H9H5 199 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 A0A0J9YXY3 114 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 IGHV3-30-3P0DP02 117 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 C11orf72Q8NBR9 251 aa11.67□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TRAV25A0A0B4J276 109 aa11.66□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 IGHV3-33P01772 117 aa11.66□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 ZNF415Q09FC8 603 aa11.66□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 DNAJC30Q96LL9 226 aa11.66□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 RNASE13Q5GAN3 156 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 C4orf3Q8WVX3 66 aa11.65□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 LITAFQ99732 161 aa11.65□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 PEMTQ9UBM1 199 aa11.65□□□□□ -0.54
MSH5-SAPCD1-208ENST00000498473 TRAV8-3A0A0A6YYJ7 113 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 A0A0B4J2C4 111 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 LINC00467Q9BRT7 94 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 UBE2D4Q9Y2X8 147 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 ADARB2-AS1A8MUL3 147 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 TIMM21Q9BVV7 248 aa11.64□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 DNAJC9-AS1A6NH13 148 aa11.63□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 DEFB114Q30KQ6 69 aa11.63□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 TRAV4A0A0B4J268 109 aa11.63□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 BEAN1Q3B7T3 259 aa11.63□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 LINC01587Q99440 93 aa11.63□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 IGHV1-58A0A0C4DH39 117 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 IGKV2-29A2NJV5 120 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 IGHV3-53P01767 116 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 SCGB1C2P0DMR2 95 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 COL6A5A8TX70 2615 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 TRRAPQ9Y4A5 3859 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 TINCRA0A1B0GVN0 87 aa11.62□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 STAB1Q9NY15 2570 aa11.61□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 RS1O15537 224 aa11.61□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 DYNLRB2Q8TF09 96 aa11.61□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 IGHV3-38A0A0C4DH36 116 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 ADAMTSL4-AS1Q5T5F5 129 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 ANKRD29Q8N6D5 301 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 WNK1Q9H4A3 2382 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 SMIM9A6NGZ8 99 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 A8MZ25 164 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 KHDC1LQ5JSQ8 128 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 VSIG2Q96IQ7 327 aa11.6□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 INSP01308 110 aa11.59□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 H7C2G1 150 aa11.59□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 CRLF1O75462 422 aa11.59□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 NDUFA12Q9UI09 145 aa11.59□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 VWFP04275 2813 aa11.59□□□□□ -0.55
MSH5-SAPCD1-208ENST00000498473 MRPL23Q16540 153 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 ODF3L2Q3SX64 289 aa11.58□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 SPANXDQ9BXN6 97 aa11.58□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 SPANXCQ9NY87 97 aa11.58□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 SLC25A20O43772 301 aa11.56□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 Q6ZSV7 163 aa11.56□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 C1orf158Q8N1D5 194 aa11.56□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 XCL2Q9UBD3 114 aa11.56□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 C9JAW5 83 aa11.55□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 IL17DQ8TAD2 202 aa11.55□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 PRSS2P07478 247 aa11.55□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 MIAQ16674 131 aa11.55□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms