RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 LINC01547P58512 204 aaPredicted RBP4.41□□□□□ -1.7
USF3-204ENST00000496826 C2orf16Q68DN1 1984 aa4.4□□□□□ -1.7
USF3-204ENST00000496826 TRBV6-4A0A1B0GX49 114 aa4.4□□□□□ -1.7
USF3-204ENST00000496826 AVPP01185 164 aa4.4□□□□□ -1.7
USF3-204ENST00000496826 BEAN1Q3B7T3 259 aa4.4□□□□□ -1.7
USF3-204ENST00000496826 ECM29Q5VYK3 1845 aa4.4□□□□□ -1.7
USF3-204ENST00000496826 LINC01465Q8N7H1 131 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 LINC00308Q8TCZ7 52 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 LOC101927531A0A1B0GV80 90 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 C19orf84I3L1E1 186 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 IGLV7-43P04211 117 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 LINC00694P0DN24 101 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 DEFB135Q30KP9 77 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 Q8N6K4 173 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 NUPR1O60356 82 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 EGFEM1PQ0D2K5 195 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 SOSTDC1Q6X4U4 206 aa4.4□□□□□ -1.71
USF3-204ENST00000496826 WISP3O95389 354 aaPredicted RBP4.39□□□□□ -1.71
USF3-204ENST00000496826 LY6G6CO95867 125 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 C1orf64Q8NEQ6 169 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 A0A0U1RQS6 177 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 MSMPQ1L6U9 139 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 GREB1LQ9C091 1923 aaPredicted RBP4.39□□□□□ -1.71
USF3-204ENST00000496826 SBF1O95248 1867 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 IGKV2D-30A0A075B6S6 120 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 IGKV2-30P06310 120 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 ADORA2A-AS1P86434 159 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 PLXNB3Q9ULL4 1909 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 BRWD3Q6RI45 1802 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 C20orf203Q8NBC4 194 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 CDIP1Q9H305 208 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 PLXNA1Q9UIW2 1896 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 PSME4Q14997 1843 aa4.39□□□□□ -1.71
USF3-204ENST00000496826 J3QL48 77 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 PIN1P1O15428 100 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 GNRH2O43555 120 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 IGLV3-19P01714 112 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 LINC00526Q96FQ7 95 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 HELZP42694 1942 aaKnown RBP4.38□□□□□ -1.71
USF3-204ENST00000496826 UBR3Q6ZT12 1888 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 NUP98P52948 1817 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 PIEZO1Q92508 2521 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 RPS28P62857 69 aaKnown RBP4.38□□□□□ -1.71
USF3-204ENST00000496826 LYPD5Q6UWN5 251 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 FRMPD3Q5JV73 1810 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 RREB1Q92766 1687 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 PARP14Q460N5 1801 aa4.38□□□□□ -1.71
USF3-204ENST00000496826 ZNF106Q9H2Y7 1883 aaKnown RBP4.37□□□□□ -1.71
USF3-204ENST00000496826 PSPHP1O15172 72 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 NTM-AS1Q6ZSK4 140 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 CUL9Q8IWT3 2517 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 MON2Q7Z3U7 1717 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 ZNF236Q9UL36 1845 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 ADAMTSL3P82987 1691 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 RICTORQ6R327 1708 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 IGLV3-12A0A075B6K2 115 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 Q8IZM0 81 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 C15orf65H3BRN8 121 aa4.37□□□□□ -1.71
USF3-204ENST00000496826 DAZAP2Q15038 168 aaPredicted RBP4.37□□□□□ -1.71
USF3-204ENST00000496826 CD164Q04900 197 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 LINC01561Q8N1V8 128 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 LRP5O75197 1615 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 GPHA2Q96T91 129 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 XIRP1Q702N8 1843 aaKnown RBP4.36□□□□□ -1.71
USF3-204ENST00000496826 LINC00313P59037 77 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 C10orf55Q5SWW7 151 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 C1orf134Q5TEV5 83 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 TRBV6-8A0A0A6YYG3 113 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 SMIM10L1P0DMW3 83 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 PLAC4Q8WY50 150 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 SMIM10Q96HG1 83 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 MSRB1Q9NZV6 116 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 TFF1P04155 84 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 IGFL3Q6UXB1 125 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 PTPRDP23468 1912 aa4.36□□□□□ -1.71
USF3-204ENST00000496826 ACACBO00763 2458 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 Q8N7P7 452 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 A0A1B0GUV1 79 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 CRIP2P52943 208 aaPredicted RBP4.35□□□□□ -1.71
USF3-204ENST00000496826 CAMTA1Q9Y6Y1 1673 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 A0A0G2JMZ2 1700 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 LRRC37A2A6NM11 1700 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 LRRC37AA6NMS7 1700 aa4.35□□□□□ -1.71
USF3-204ENST00000496826 SPINK2P20155 84 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 MOBPQ13875 183 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 ANAPC1Q9H1A4 1944 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 IGLV4-60A0A075B6I1 120 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 Q0VFX4 171 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 C10orf91Q5T1B1 145 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.34□□□□□ -1.71
USF3-204ENST00000496826 ZNF22P17026 224 aaPredicted RBP4.34□□□□□ -1.71
USF3-204ENST00000496826 WFDC2Q14508 124 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 PRO3102Q9H379 93 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 CDKN2A-AS1Q9UH64 79 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 VWA8A3KMH1 1905 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 PATE3B3GLJ2 98 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 PPDPFQ9H3Y8 114 aa4.34□□□□□ -1.71
USF3-204ENST00000496826 OBSL1O75147 1896 aa4.34□□□□□ -1.72
USF3-204ENST00000496826 ATG2AQ2TAZ0 1938 aa4.34□□□□□ -1.72
USF3-204ENST00000496826 ODF3BA8MYP8 253 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms