RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RBM3P98179 157 aaKnown RBP-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 SPANXA1Q9NS26 97 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 DNAH2Q9P225 4427 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 DNAH10Q8IVF4 4471 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 PLXNA2O75051 1894 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 LRP6O75581 1613 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 GOLGB1Q14789 3259 aaKnown RBP-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 ASXL3Q9C0F0 2248 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 TRBV20-1A0A075B6N2 111 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 CFDP00746 253 aaPredicted RBP-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 KRTAP19-8Q3LI54 63 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 MIC13Q5XKP0 118 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 KIF13AQ9H1H9 1805 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 LAMB1P07942 1786 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 VPS13DQ5THJ4 4388 aa-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 ZNF142P52746 1687 aaPredicted RBP-0.27□□□□□ -2.45
SCN1A-206ENST00000491429 ZZEF1O43149 2961 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 DNAH8Q96JB1 4490 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 FAM236AA0A1B0GUQ0 79 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 FAM236BA0A1B0GV22 79 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 INSL4Q14641 139 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 MORN2Q502X0 79 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 SSBP3-AS1Q7Z2R9 100 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 UBE2DNLQ8IWF7 75 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 MMGT1Q8N4V1 131 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 VSTM2AQ8TAG5 236 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 AIF1LQ9BQI0 150 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 NHSL1Q5SYE7 1610 aa-0.28□□□□□ -2.45
SCN1A-206ENST00000491429 ZNF815PA8K554 130 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 PRM1P04553 51 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 PIRTP0C851 137 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 EDDM3BP56851 147 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 B2MP61769 119 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 RPL7L1Q6DKI1 246 aaKnown RBP-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 C10orf82Q8WW14 230 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 BATF3Q9NR55 127 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 SCP2D1Q9UJQ7 156 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 LAMC1P11047 1609 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 PAPPAQ13219 1627 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 ALKQ9UM73 1620 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 ASXL1Q8IXJ9 1541 aa-0.29□□□□□ -2.46
SCN1A-206ENST00000491429 AHCTF1Q8WYP5 2266 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 BICRAQ9NZM4 1560 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 IGLC6P0CF74 106 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 HIST1H1AQ02539 215 aaPredicted RBP-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 SPANXN1Q5VSR9 72 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 SAR1AQ9NR31 198 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 RPRMQ9NS64 109 aa-0.3□□□□□ -2.46
SCN1A-206ENST00000491429 ZMYM4Q5VZL5 1548 aa-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 A6NIN4 97 aa-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 SMR3BP02814 79 aaPredicted RBP-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 C9orf116Q5BN46 136 aaPredicted RBP-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 SMIM3Q9BZL3 60 aa-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 RIMS1Q86UR5 1692 aaKnown RBP-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 ZNF609O15014 1411 aa-0.31□□□□□ -2.46
SCN1A-206ENST00000491429 IBTKQ9P2D0 1353 aaPredicted RBP-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 GOLGA3Q08378 1498 aa-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 TRAV1-2A0A0B4J238 106 aa-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 SCGB1A1P11684 91 aa-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 UBE2G1P62253 170 aa-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 KRTAP6-2Q3LI66 62 aa-0.32□□□□□ -2.46
SCN1A-206ENST00000491429 AKAP6Q13023 2319 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 PLCE1Q9P212 2302 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 G3V318 75 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 LINC00694P0DN24 101 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 CTAGE3PQ8IX95 158 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 WFDC6Q9BQY6 131 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 PSMG3Q9BT73 122 aaPredicted RBP-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 CYP4F30PQ9H0H9 118 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 PRO0255Q9UI72 69 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 NRXN2Q9P2S2 1712 aa-0.33□□□□□ -2.46
SCN1A-206ENST00000491429 OVOS2A0A0J9YW53 1432 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 LCE6AA0A183 80 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 FAM92AA1XBS5 289 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 J3QR89 54 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 UBE2D1P51668 147 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 CKS1BP61024 79 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 OVOS2Q6IE36 1432 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 SPTSSBQ8NFR3 76 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 PYDC1Q8WXC3 89 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 URB1O60287 2271 aaKnown RBP-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 PHIPQ8WWQ0 1821 aa-0.34□□□□□ -2.46
SCN1A-206ENST00000491429 MAGI2Q86UL8 1455 aa-0.35□□□□□ -2.46
SCN1A-206ENST00000491429 PLXNA1Q9UIW2 1896 aa-0.35□□□□□ -2.46
SCN1A-206ENST00000491429 DISP2A7MBM2 1401 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 CLPSL1A2RUU4 121 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 M0R2Z0 102 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 PITX3O75364 302 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 IFNA17P01571 189 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 IL5P05113 134 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 S100A7L2Q5SY68 101 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 Q6ZUT4 128 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 AKAP14Q86UN6 197 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 KRTAP8-1Q8IUC2 63 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 ARHGEF10O15013 1369 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 ANKRD30AQ9BXX3 1397 aa-0.35□□□□□ -2.47
SCN1A-206ENST00000491429 TSC2P49815 1807 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 CUL7Q14999 1698 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 A0A0D9SFI3 127 aa-0.36□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms