RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 RETNQ9HD89 108 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 CELA1Q9UNI1 258 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 A0A087WX48 190 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 IGIPA6NJ69 53 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 HSBP1L1C9JCN9 74 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 GAS8-AS1O95177 125 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 NANOS2P60321 138 aaKnown RBP4.85□□□□□ -1.63
SYNE1-229ENST00000490866 S100A12P80511 92 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 PMVKQ15126 192 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 CEMP1Q6PRD7 247 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-229ENST00000490866 LYPD5Q6UWN5 251 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 TEX43Q6ZNM6 134 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 OR5A1Q8NGJ0 315 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 URB1-AS1Q96HZ7 61 aa4.85□□□□□ -1.63
SYNE1-229ENST00000490866 A0A096LPF7 62 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 A0A0J9YY99 117 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 TMEM262E9PQX1 116 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 SYS1-DBNDD2H3BUS1 97 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 SMIM6P0DI80 62 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 P0DMU3 169 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 FAM231AP0DMU4 169 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 FAM231CP0DMU5 169 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 JOSD1Q15040 202 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-229ENST00000490866 LGALS9CQ6DKI2 356 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 FAM19A2Q8N3H0 131 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 C10orf126Q8N4M7 172 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 OR10D4PQ8NGN7 298 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 CHCHD5Q9BSY4 110 aa4.84□□□□□ -1.63
SYNE1-229ENST00000490866 TRAV8-4A0A0B4J246 113 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 NUPR1O60356 82 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 SCGB1D1O95968 90 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 FGF6P10767 208 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 KRTDAPP60985 99 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 ZNF664Q8N3J9 261 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 UBE2D4Q9Y2X8 147 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 COX11Q9Y6N1 276 aa4.83□□□□□ -1.64
SYNE1-229ENST00000490866 LOC105371267A0A1B0GV96 52 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 IGLL5B9A064 214 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 F8VRH5 84 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 C3orf84H3BNL1 204 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 SS18Q15532 418 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 LINC01545Q5VT33 79 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 SFTA2Q6UW10 78 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 NTM-AS1Q6ZSK4 140 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 WWC2-AS2Q96NR7 200 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 AMELXQ99217 191 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 UPK3BQ9BT76 320 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 CST9LQ9H4G1 147 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 CDC42SE2Q9NRR3 84 aa4.82□□□□□ -1.64
SYNE1-229ENST00000490866 DNHD1Q96M86 4753 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 MEGF8Q7Z7M0 2845 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 A0A096LNJ9 63 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 IGHV3-38A0A0C4DH36 116 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 H3BRM9 83 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 DPM2O94777 84 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 C3orf79P0CE67 100 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 HERVK_113P61574 105 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 HERVK_113P63121 156 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 LCE5AQ5TCM9 118 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 FAM19A3Q7Z5A8 133 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 RMI2Q96E14 147 aa4.81□□□□□ -1.64
SYNE1-229ENST00000490866 CHTOPQ9Y3Y2 248 aaKnown RBP4.81□□□□□ -1.64
SYNE1-229ENST00000490866 TRAV8-3A0A0A6YYJ7 113 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 LOC100131303A0A0U1RQF7 123 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 TINCRA0A1B0GVN0 87 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 PRSS29PA6NIE9 313 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 IGKCP01834 107 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 GCSHP23434 173 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 MIAQ16674 131 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 LINC01556Q5JQF7 62 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 LINC01561Q8N1V8 128 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 BAALCQ8WXS3 180 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 GEMIN7Q9H840 131 aaKnown RBP4.8□□□□□ -1.64
SYNE1-229ENST00000490866 Q9UF83 564 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 MRPS16Q9Y3D3 137 aaKnown RBP4.8□□□□□ -1.64
SYNE1-229ENST00000490866 COL7A1Q02388 2944 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 STAB2Q8WWQ8 2551 aa4.8□□□□□ -1.64
SYNE1-229ENST00000490866 IGLV4-3A0A075B6K6 122 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 IFITM10A6NMD0 228 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 SIVA1O15304 175 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 DNAH10OSP0CZ25 163 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 RPL39P62891 51 aaKnown RBP4.79□□□□□ -1.64
SYNE1-229ENST00000490866 ESRGQ1W209 222 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 NFE4Q86UQ8 179 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 MUC7Q8TAX7 377 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 KRTAP4-2Q9BYR5 136 aa4.79□□□□□ -1.64
SYNE1-229ENST00000490866 TENM3Q9P273 2699 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-229ENST00000490866 IGKV2-29A2NJV5 120 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-229ENST00000490866 LINC00587B1AMM8 73 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 CRPP02741 224 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 ANGP03950 147 aaKnown RBP4.78□□□□□ -1.64
SYNE1-229ENST00000490866 IGLC3P0DOY3 106 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 RBX1P62877 108 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 ODF1Q14990 250 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 TTC32Q5I0X7 151 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 CFAP161Q6P656 301 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 PMCHL2Q9BQD1 86 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 VAMP8Q9BV40 100 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 KRTAP9-3Q9BYQ3 159 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms