RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 Q6ZUT4 128 aa14.97□□□□□ -0.01
SMC4-221ENST00000489573 VCX2Q9H322 139 aa14.97□□□□□ -0.01
SMC4-221ENST00000489573 CST9LQ9H4G1 147 aa14.97□□□□□ -0.01
SMC4-221ENST00000489573 CHTOPQ9Y3Y2 248 aaKnown RBP14.97□□□□□ -0.01
SMC4-221ENST00000489573 F8VRH5 84 aa14.96□□□□□ -0.01
SMC4-221ENST00000489573 MRPL35Q9NZE8 188 aaKnown RBP14.96□□□□□ -0.01
SMC4-221ENST00000489573 ZNF25P17030 456 aaPredicted RBP14.95□□□□□ -0.02
SMC4-221ENST00000489573 TIRAPP58753 221 aa14.95□□□□□ -0.02
SMC4-221ENST00000489573 OR5A1Q8NGJ0 315 aa14.95□□□□□ -0.02
SMC4-221ENST00000489573 TMEM101Q96IK0 257 aa14.95□□□□□ -0.02
SMC4-221ENST00000489573 AMELXQ99217 191 aa14.95□□□□□ -0.02
SMC4-221ENST00000489573 DPM2O94777 84 aa14.94□□□□□ -0.02
SMC4-221ENST00000489573 LELP1Q5T871 98 aa14.94□□□□□ -0.02
SMC4-221ENST00000489573 VAMP8Q9BV40 100 aa14.94□□□□□ -0.02
SMC4-221ENST00000489573 LYPD5Q6UWN5 251 aa14.94□□□□□ -0.02
SMC4-221ENST00000489573 C15orf53Q8NAA6 179 aa14.94□□□□□ -0.02
SMC4-221ENST00000489573 IGKCP01834 107 aa14.93□□□□□ -0.02
SMC4-221ENST00000489573 RNASE13Q5GAN3 156 aaKnown RBP14.93□□□□□ -0.02
SMC4-221ENST00000489573 TRAV9-2A0A087WT02 112 aa14.92□□□□□ -0.02
SMC4-221ENST00000489573 PLNP26678 52 aa14.92□□□□□ -0.02
SMC4-221ENST00000489573 C2orf88Q9BSF0 95 aa14.91□□□□□ -0.02
SMC4-221ENST00000489573 CDC42SE2Q9NRR3 84 aa14.91□□□□□ -0.02
SMC4-221ENST00000489573 TMEM262E9PQX1 116 aa14.9□□□□□ -0.02
SMC4-221ENST00000489573 ZNF664Q8N3J9 261 aa14.9□□□□□ -0.02
SMC4-221ENST00000489573 PAM16Q9Y3D7 125 aa14.9□□□□□ -0.02
SMC4-221ENST00000489573 IGLV4-69A0A075B6H9 119 aa14.9□□□□□ -0.02
SMC4-221ENST00000489573 MAJINQ3KP22 176 aa14.9□□□□□ -0.02
SMC4-221ENST00000489573 hDV102S1A0JD36 115 aa14.89□□□□□ -0.03
SMC4-221ENST00000489573 HSBP1L1C9JCN9 74 aa14.89□□□□□ -0.03
SMC4-221ENST00000489573 PKIAP61925 76 aa14.89□□□□□ -0.03
SMC4-221ENST00000489573 IGLV4-60A0A075B6I1 120 aa14.88□□□□□ -0.03
SMC4-221ENST00000489573 A0A1B0GUV1 79 aa14.88□□□□□ -0.03
SMC4-221ENST00000489573 IGLL5B9A064 214 aa14.87□□□□□ -0.03
SMC4-221ENST00000489573 RBX1P62877 108 aa14.87□□□□□ -0.03
SMC4-221ENST00000489573 MPV17L2Q567V2 206 aa14.87□□□□□ -0.03
SMC4-221ENST00000489573 TRAV8-6A0A0B4J262 113 aa14.86□□□□□ -0.03
SMC4-221ENST00000489573 IGLC3P0DOY3 106 aa14.86□□□□□ -0.03
SMC4-221ENST00000489573 ESRGQ1W209 222 aa14.86□□□□□ -0.03
SMC4-221ENST00000489573 SPATA45Q537H7 98 aa14.86□□□□□ -0.03
SMC4-221ENST00000489573 C11orf86A6NJI1 115 aa14.85□□□□□ -0.03
SMC4-221ENST00000489573 A0A0J9YXV3 536 aa14.85□□□□□ -0.03
SMC4-221ENST00000489573 UBE2D1P51668 147 aa14.85□□□□□ -0.03
SMC4-221ENST00000489573 NFE4Q86UQ8 179 aa14.85□□□□□ -0.03
SMC4-221ENST00000489573 CHAC1Q9BUX1 264 aa14.85□□□□□ -0.03
SMC4-221ENST00000489573 STPG4Q8N801 248 aa14.83□□□□□ -0.04
SMC4-221ENST00000489573 PRO1933Q9H354 126 aa14.81□□□□□ -0.04
SMC4-221ENST00000489573 TRAV13-1A0A0B4J241 112 aa14.81□□□□□ -0.04
SMC4-221ENST00000489573 TINCRA0A1B0GVN0 87 aa14.81□□□□□ -0.04
SMC4-221ENST00000489573 ANKRD39Q53RE8 183 aa14.81□□□□□ -0.04
SMC4-221ENST00000489573 COL7A1Q02388 2944 aa14.8□□□□□ -0.04
SMC4-221ENST00000489573 WFDC10BQ8IUB3 73 aa14.8□□□□□ -0.04
SMC4-221ENST00000489573 Q8N3U1 123 aa14.8□□□□□ -0.04
SMC4-221ENST00000489573 NUPR2A6NF83 97 aa14.79□□□□□ -0.04
SMC4-221ENST00000489573 TMEM170BQ5T4T1 132 aa14.79□□□□□ -0.04
SMC4-221ENST00000489573 FAM19A3Q7Z5A8 133 aa14.79□□□□□ -0.04
SMC4-221ENST00000489573 STAB2Q8WWQ8 2551 aa14.79□□□□□ -0.04
SMC4-221ENST00000489573 TSTD3H0UI37 97 aa14.78□□□□□ -0.04
SMC4-221ENST00000489573 ANGP03950 147 aaKnown RBP14.78□□□□□ -0.04
SMC4-221ENST00000489573 ZNF22P17026 224 aaPredicted RBP14.78□□□□□ -0.04
SMC4-221ENST00000489573 SEC11AP67812 179 aa14.78□□□□□ -0.04
SMC4-221ENST00000489573 GEMIN7Q9H840 131 aaKnown RBP14.78□□□□□ -0.04
SMC4-221ENST00000489573 IGKV3OR2-268A0A0C4DH90 116 aa14.77□□□□□ -0.04
SMC4-221ENST00000489573 CCL18P55774 89 aa14.77□□□□□ -0.04
SMC4-221ENST00000489573 TCTAP57738 103 aa14.77□□□□□ -0.04
SMC4-221ENST00000489573 LINC00242Q5T6M2 205 aa14.77□□□□□ -0.04
SMC4-221ENST00000489573 MRPS16Q9Y3D3 137 aaKnown RBP14.77□□□□□ -0.05
SMC4-221ENST00000489573 HERVK_113P61574 105 aa14.76□□□□□ -0.05
SMC4-221ENST00000489573 HERVK_113P63121 156 aa14.76□□□□□ -0.05
SMC4-221ENST00000489573 LINC00588Q9Y4M8 146 aa14.76□□□□□ -0.05
SMC4-221ENST00000489573 LINC00269Q8N2A0 174 aa14.75□□□□□ -0.05
SMC4-221ENST00000489573 LINC00469Q8N7U9 141 aa14.75□□□□□ -0.05
SMC4-221ENST00000489573 KLK5Q9Y337 293 aaPredicted RBP14.75□□□□□ -0.05
SMC4-221ENST00000489573 IGLV5-45A0A087WSX0 123 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 LINC00959A0A1B0GUT2 108 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 IGHV3-30P01768 117 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 IGHV3-33P01772 117 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 IGHV3-30-3P0DP02 117 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 IGHV3-30-5P0DP03 117 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 CLPSL2Q6UWE3 100 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 APLNQ9ULZ1 77 aa14.74□□□□□ -0.05
SMC4-221ENST00000489573 C14orf144Q96I85 54 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 IGKV2D-26A0A0A0MRZ7 120 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 TMEM223A0PJW6 202 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 E9PLD3 99 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 NMUP48645 174 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 COX6A2Q02221 97 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 REG3AQ06141 175 aa14.73□□□□□ -0.05
SMC4-221ENST00000489573 SS18Q15532 418 aa14.72□□□□□ -0.05
SMC4-221ENST00000489573 LINC01556Q5JQF7 62 aa14.72□□□□□ -0.05
SMC4-221ENST00000489573 KLK12Q9UKR0 248 aa14.72□□□□□ -0.05
SMC4-221ENST00000489573 PCP4L1A6NKN8 68 aa14.71□□□□□ -0.05
SMC4-221ENST00000489573 H3BRM9 83 aa14.71□□□□□ -0.05
SMC4-221ENST00000489573 CCL25O15444 150 aa14.71□□□□□ -0.05
SMC4-221ENST00000489573 CDKN2A-AS1Q9UH64 79 aa14.71□□□□□ -0.05
SMC4-221ENST00000489573 COX8AP10176 69 aa14.7□□□□□ -0.06
SMC4-221ENST00000489573 UQCR10Q9UDW1 63 aa14.7□□□□□ -0.06
SMC4-221ENST00000489573 UPK3BQ9BT76 320 aa14.69□□□□□ -0.06
SMC4-221ENST00000489573 PRR34Q9NV39 138 aa14.69□□□□□ -0.06
SMC4-221ENST00000489573 DNAH10OSP0CZ25 163 aa14.68□□□□□ -0.06
SMC4-221ENST00000489573 MIEN1Q9BRT3 115 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 580.8 ms