RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LAGE3Q14657 143 aa6.98□□□□□ -1.29
SKA1-204ENST00000488454 MPV17L2Q567V2 206 aa6.98□□□□□ -1.29
SKA1-204ENST00000488454 DGAT2L7PQ6IED9 249 aa6.98□□□□□ -1.29
SKA1-204ENST00000488454 KLK12Q9UKR0 248 aa6.98□□□□□ -1.29
SKA1-204ENST00000488454 A0A1B0GUV1 79 aa6.97□□□□□ -1.29
SKA1-204ENST00000488454 IBA57-AS1B1ANH7 110 aa6.97□□□□□ -1.29
SKA1-204ENST00000488454 FGF6P10767 208 aa6.97□□□□□ -1.29
SKA1-204ENST00000488454 ZNF25P17030 456 aaPredicted RBP6.97□□□□□ -1.29
SKA1-204ENST00000488454 BTF3P20290 206 aaKnown RBP6.97□□□□□ -1.29
SKA1-204ENST00000488454 Q8N976 141 aa6.97□□□□□ -1.29
SKA1-204ENST00000488454 C20orf203Q8NBC4 194 aa6.97□□□□□ -1.29
SKA1-204ENST00000488454 TRAV8-3A0A0A6YYJ7 113 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 CRPP02741 224 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 LINC00614P0C842 121 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 Q0VG73 95 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 C1orf134Q5TEV5 83 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 Q6ZR54 194 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 NFE4Q86UQ8 179 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 OR5A1Q8NGJ0 315 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 C18orf32Q8TCD1 76 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 LYSTQ99698 3801 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 HYDINQ4G0P3 5121 aa6.96□□□□□ -1.3
SKA1-204ENST00000488454 RYR2Q92736 4967 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 MRPL52Q86TS9 123 aaKnown RBP6.95□□□□□ -1.3
SKA1-204ENST00000488454 BAGE3Q86Y29 109 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 LINC00269Q8N2A0 174 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 C6orf223Q8N319 242 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 UBE2WQ96B02 151 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 Q9HAA7 133 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 CYSLTR1Q9Y271 337 aa6.95□□□□□ -1.3
SKA1-204ENST00000488454 EPPK1P58107 5090 aaKnown RBP6.94□□□□□ -1.3
SKA1-204ENST00000488454 IGLV4-60A0A075B6I1 120 aa6.94□□□□□ -1.3
SKA1-204ENST00000488454 LINC01549A6NIU2 74 aa6.94□□□□□ -1.3
SKA1-204ENST00000488454 RMI2Q96E14 147 aa6.94□□□□□ -1.3
SKA1-204ENST00000488454 TIMM21Q9BVV7 248 aa6.94□□□□□ -1.3
SKA1-204ENST00000488454 KRTAP1-5Q9BYS1 174 aa6.94□□□□□ -1.3
SKA1-204ENST00000488454 CSDC2Q9Y534 153 aaKnown RBP6.94□□□□□ -1.3
SKA1-204ENST00000488454 LINC01546A6NGU7 62 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 RPL39P62891 51 aaKnown RBP6.93□□□□□ -1.3
SKA1-204ENST00000488454 C2orf66Q6UXQ4 117 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 ZNF664Q8N3J9 261 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 TM2D2Q9BX73 214 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 SPANXA1Q9NS26 97 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 UBE2D4Q9Y2X8 147 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 COX11Q9Y6N1 276 aa6.93□□□□□ -1.3
SKA1-204ENST00000488454 IGKV3OR2-268A0A0C4DH90 116 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 C1orf196B1AJZ1 125 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 PSCAO43653 123 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 REG3AQ06141 175 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 MIAQ16674 131 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 CLPSL2Q6UWE3 100 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 ENHOQ6UWT2 76 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 CHCHD1Q96BP2 118 aaKnown RBP6.92□□□□□ -1.3
SKA1-204ENST00000488454 CDC42SE2Q9NRR3 84 aa6.92□□□□□ -1.3
SKA1-204ENST00000488454 IGKV2D-24A0A075B6R9 120 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 TRAV8-4A0A0B4J246 113 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 HSBP1O75506 76 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 PAPPA-AS1Q5QFB9 102 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 Q6ZN92 141 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 TOMM6Q96B49 74 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 SCGB3A1Q96QR1 104 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 C1orf43Q9BWL3 253 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 KRTAP4-9Q9BYQ8 210 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 PRR34Q9NV39 138 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 PYGO1Q9Y3Y4 419 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 KMT2AQ03164 3969 aa6.91□□□□□ -1.3
SKA1-204ENST00000488454 C9orf118A6NHY6 69 aa6.9□□□□□ -1.3
SKA1-204ENST00000488454 HBDP02042 147 aa6.9□□□□□ -1.3
SKA1-204ENST00000488454 MRPS36P82909 103 aaKnown RBP6.9□□□□□ -1.3
SKA1-204ENST00000488454 SS18Q15532 418 aa6.9□□□□□ -1.3
SKA1-204ENST00000488454 TMEM141Q96I45 108 aa6.9□□□□□ -1.3
SKA1-204ENST00000488454 VCX2Q9H322 139 aa6.9□□□□□ -1.3
SKA1-204ENST00000488454 DNAH6Q9C0G6 4158 aa6.9□□□□□ -1.31
SKA1-204ENST00000488454 NPSP0C0P6 89 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 LINC00336Q6ZUF6 198 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 Q6ZUT4 128 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 ERASQ7Z444 233 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 URB1-AS1Q96HZ7 61 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 C2orf88Q9BSF0 95 aa6.89□□□□□ -1.31
SKA1-204ENST00000488454 IGLV10-54A0A075B6I4 117 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 IGLV4-3A0A075B6K6 122 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 LINC00959A0A1B0GUT2 108 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 IGIPA6NJ69 53 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.88□□□□□ -1.31
SKA1-204ENST00000488454 ZNF561-AS1K7EIQ3 104 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 CCL25O15444 150 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BKO60814 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 SERF1AO75920 110 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BJP06899 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BOP23527 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BBP33778 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BDP58876 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BCP62807 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 PMCHL1Q16048 86 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST2H2BEQ16778 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 RNASE13Q5GAN3 156 aaKnown RBP6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.88□□□□□ -1.31
SKA1-204ENST00000488454 TEX43Q6ZNM6 134 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BHQ93079 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 TIMM17AQ99595 171 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms