RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 GSKIPQ9P0R6 139 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 V9GYS6 101 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 RGPD8O14715 1765 aaPredicted RBP0.74□□□□□ -2.29
SMC4-218ENST00000486711 LTN1O94822 1766 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 RGPD2P0DJD1 1756 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 COL14A1Q05707 1796 aaKnown RBP0.74□□□□□ -2.29
SMC4-218ENST00000486711 BCORQ6W2J9 1755 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 DLEC1Q9Y238 1755 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 ARFGEF2Q9Y6D5 1785 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 C4AP0C0L4 1744 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 C4BP0C0L5 1744 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 DDX60LQ5H9U9 1706 aaKnown RBP0.74□□□□□ -2.29
SMC4-218ENST00000486711 ARAP2Q8WZ64 1704 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 ZNF142P52746 1687 aaPredicted RBP0.74□□□□□ -2.29
SMC4-218ENST00000486711 PLCH1Q4KWH8 1693 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 TOPAZ1Q8N9V7 1692 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 ALS2Q96Q42 1657 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 ROBO1Q9Y6N7 1651 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 LRP5O75197 1615 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 PAPPAQ13219 1627 aa0.74□□□□□ -2.29
SMC4-218ENST00000486711 DOCK2Q92608 1830 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 RGPD5Q99666 1765 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 QSER1Q2KHR3 1735 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 DOT1LQ8TEK3 1739 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 ABCA3Q99758 1704 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 TRAV1-2A0A0B4J238 106 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 TCRBV3S1A0A5B6 114 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 LINC00587B1AMM8 73 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 TMEM262E9PQX1 116 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 ZNF670-ZNF695F2Z2N8 137 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 K7EMI3 77 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 K7ERU9 68 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 M0R143 59 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 CORTO00230 105 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 CFDP00746 253 aaPredicted RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 IL5P05113 134 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 AKAIN1P0CW23 69 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 RRAS2P62070 204 aaPredicted RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 SNRPGP62308 76 aaKnown RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 BTG2P78543 158 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 KLKP1Q107X0 134 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 PMCHL1Q16048 86 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 MORN2Q502X0 79 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 CLLU1Q5K131 121 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 RPL7L1Q6DKI1 246 aaKnown RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 MRPL54Q6P161 138 aaKnown RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 GTF2H5Q6ZYL4 71 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 ACBD7Q8N6N7 88 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 C10orf82Q8WW14 230 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 LCN9Q8WX39 176 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 PMCHL2Q9BQD1 86 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 SEC11CQ9BY50 192 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 NMES1Q9C002 83 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 PLAC8Q9NZF1 115 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 ARL2-SNX15V9GYD0 113 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 DOCK1Q14185 1865 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 PDCD11Q14690 1871 aaKnown RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 PATJQ8NI35 1801 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 RGPD3A6NKT7 1758 aaPredicted RBP0.73□□□□□ -2.29
SMC4-218ENST00000486711 RGPD4Q7Z3J3 1758 aa0.73□□□□□ -2.29
SMC4-218ENST00000486711 NRXN3Q9Y4C0 1643 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 CDK5RAP2Q96SN8 1893 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 A0A087WWC5 75 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 FAM24AA6NFZ4 105 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 PRH1P02810 166 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 HIST1H1DP16402 221 aaKnown RBP0.72□□□□□ -2.29
SMC4-218ENST00000486711 FGF7P21781 194 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 PKIAP61925 76 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 RPL37P61927 97 aaKnown RBP0.72□□□□□ -2.29
SMC4-218ENST00000486711 CATR1Q13166 79 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 LINC01545Q5VT33 79 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 Q6AWC8 147 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 SFTA2Q6UW10 78 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 ATP6V0E2Q8NHE4 81 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 VSTM2AQ8TAG5 236 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 PP6455Q8WZ26 134 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 TSLPQ969D9 159 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 SPTSSAQ969W0 71 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 FAM103A1Q9BTL3 118 aaKnown RBP0.72□□□□□ -2.29
SMC4-218ENST00000486711 MANBALQ9NQG1 85 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 TMEM14BQ9NUH8 114 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 SBF2Q86WG5 1849 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 A0A1B0GUL6 1792 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 LOC285556D6RIA3 1793 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 SIPA1L3O60292 1781 aaPredicted RBP0.72□□□□□ -2.29
SMC4-218ENST00000486711 RBBP6Q7Z6E9 1792 aaKnown RBP0.72□□□□□ -2.29
SMC4-218ENST00000486711 NRAPQ86VF7 1730 aa0.72□□□□□ -2.29
SMC4-218ENST00000486711 FOCADQ5VW36 1801 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 TEX49A0A1B0GTD5 131 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 IQCF6A8MYZ5 107 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 J3QLW9 94 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 TNFP01375 233 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 APOC3P02656 99 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 GYPAP02724 150 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 ACYP1P07311 99 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 COX6CP09669 75 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 SLC25A6P12236 298 aa0.71□□□□□ -2.3
SMC4-218ENST00000486711 RPS25P62851 125 aaKnown RBP0.71□□□□□ -2.3
SMC4-218ENST00000486711 RPL38P63173 70 aaKnown RBP0.71□□□□□ -2.3
SMC4-218ENST00000486711 DCDP81605 110 aaKnown RBP0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms