RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 CNOT1A5YKK6 2376 aaKnown RBP-0.79□□□□□ -2.54
VPS50-217ENST00000485140 CKS1BP61024 79 aa-0.79□□□□□ -2.54
VPS50-217ENST00000485140 TMEM170BQ5T4T1 132 aa-0.79□□□□□ -2.54
VPS50-217ENST00000485140 PYDC1Q8WXC3 89 aa-0.79□□□□□ -2.54
VPS50-217ENST00000485140 LZICQ8WZA0 190 aa-0.79□□□□□ -2.54
VPS50-217ENST00000485140 ZNF518AQ6AHZ1 1483 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 STARD9Q9P2P6 4700 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 DSPP15924 2871 aaKnown RBP-0.8□□□□□ -2.54
VPS50-217ENST00000485140 C10orf128Q5T292 105 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 LENEPQ9Y5L5 61 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 V9GYH0 126 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 LAMC1P11047 1609 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 URB1O60287 2271 aaKnown RBP-0.8□□□□□ -2.54
VPS50-217ENST00000485140 TSC2P49815 1807 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 MRC1P22897 1456 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 PI4KAP42356 2102 aa-0.8□□□□□ -2.54
VPS50-217ENST00000485140 TRAV13-2A0A0B4J235 113 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 SPAARA0A1B0GVQ0 90 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 HCG22E2RYF7 251 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 SPINK4O60575 86 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 TNFP01375 233 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 SPRR1BP22528 89 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 Q6JHZ5 121 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 TCEAL4Q96EI5 215 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 TGP01266 2768 aa-0.81□□□□□ -2.54
VPS50-217ENST00000485140 PAPPAQ13219 1627 aa-0.82□□□□□ -2.54
VPS50-217ENST00000485140 APOC3P02656 99 aa-0.82□□□□□ -2.54
VPS50-217ENST00000485140 SDF2Q99470 211 aa-0.82□□□□□ -2.54
VPS50-217ENST00000485140 GOLGA4Q13439 2230 aaKnown RBP-0.83□□□□□ -2.54
VPS50-217ENST00000485140 FLGP20930 4061 aaPredicted RBP-0.83□□□□□ -2.54
VPS50-217ENST00000485140 COPZ1P61923 177 aa-0.83□□□□□ -2.54
VPS50-217ENST00000485140 TTC9CQ8N5M4 171 aa-0.83□□□□□ -2.54
VPS50-217ENST00000485140 TPT1P8Q9HAU6 139 aa-0.83□□□□□ -2.54
VPS50-217ENST00000485140 FHAD1B1AJZ9 1412 aa-0.83□□□□□ -2.54
VPS50-217ENST00000485140 MXRA5Q9NR99 2828 aa-0.83□□□□□ -2.54
VPS50-217ENST00000485140 UQCR11O14957 56 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 TPPP2P59282 170 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 SMCO1Q147U7 214 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 TSTD1Q8NFU3 115 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 COPS9Q8WXC6 57 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 MAFIPQ8WZ33 124 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 TMEM191AQ9H0A3 160 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 FXYD6Q9H0Q3 95 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 CCDC167Q9P0B6 97 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 COPZ2Q9P299 210 aa-0.84□□□□□ -2.54
VPS50-217ENST00000485140 SBF2Q86WG5 1849 aa-0.85□□□□□ -2.54
VPS50-217ENST00000485140 SPEF2Q9C093 1822 aa-0.85□□□□□ -2.54
VPS50-217ENST00000485140 ABCA13Q86UQ4 5058 aa-0.85□□□□□ -2.54
VPS50-217ENST00000485140 B2MP61769 119 aa-0.85□□□□□ -2.55
VPS50-217ENST00000485140 BAGE2Q86Y30 109 aa-0.85□□□□□ -2.55
VPS50-217ENST00000485140 AMELXQ99217 191 aa-0.85□□□□□ -2.55
VPS50-217ENST00000485140 PKHD1P08F94 4074 aa-0.85□□□□□ -2.55
VPS50-217ENST00000485140 PPIP5K1Q6PFW1 1433 aa-0.86□□□□□ -2.55
VPS50-217ENST00000485140 SVEP1Q4LDE5 3571 aa-0.86□□□□□ -2.55
VPS50-217ENST00000485140 M0R2T5 61 aa-0.86□□□□□ -2.55
VPS50-217ENST00000485140 C12orf73Q69YU5 71 aa-0.86□□□□□ -2.55
VPS50-217ENST00000485140 LAMA2P24043 3122 aaKnown RBP-0.86□□□□□ -2.55
VPS50-217ENST00000485140 ZNF236Q9UL36 1845 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 F8VRH5 84 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 RPS25P62851 125 aaKnown RBP-0.87□□□□□ -2.55
VPS50-217ENST00000485140 RBM3P98179 157 aaKnown RBP-0.87□□□□□ -2.55
VPS50-217ENST00000485140 Q6AWC8 147 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 AKAP14Q86UN6 197 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 DEFB123Q8N688 67 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 DNAJC13O75165 2243 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 ANKRD30AQ9BXX3 1397 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 SHANK2Q9UPX8 1470 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 DOCK2Q92608 1830 aa-0.87□□□□□ -2.55
VPS50-217ENST00000485140 EPG5Q9HCE0 2579 aa-0.88□□□□□ -2.55
VPS50-217ENST00000485140 LINC00472Q9H8W2 130 aa-0.88□□□□□ -2.55
VPS50-217ENST00000485140 KIF21AQ7Z4S6 1674 aa-0.88□□□□□ -2.55
VPS50-217ENST00000485140 ARAP2Q8WZ64 1704 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 ARPC5O15511 151 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 MGST2Q99735 147 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 PDCD10Q9BUL8 212 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 POLA1P09884 1462 aaPredicted RBP-0.89□□□□□ -2.55
VPS50-217ENST00000485140 GAPVD1Q14C86 1478 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 PATJQ8NI35 1801 aa-0.89□□□□□ -2.55
VPS50-217ENST00000485140 IQSEC2Q5JU85 1478 aa-0.9□□□□□ -2.55
VPS50-217ENST00000485140 HIST1H1DP16402 221 aaKnown RBP-0.9□□□□□ -2.55
VPS50-217ENST00000485140 DR1Q01658 176 aa-0.9□□□□□ -2.55
VPS50-217ENST00000485140 ANP32BQ92688 251 aaKnown RBP-0.9□□□□□ -2.55
VPS50-217ENST00000485140 DPH3Q96FX2 82 aa-0.9□□□□□ -2.55
VPS50-217ENST00000485140 DYNLRB1Q9NP97 96 aa-0.9□□□□□ -2.55
VPS50-217ENST00000485140 DOCK1Q14185 1865 aa-0.9□□□□□ -2.55
VPS50-217ENST00000485140 HECTD1Q9ULT8 2610 aa-0.91□□□□□ -2.55
VPS50-217ENST00000485140 LOC285095A0A1B0GVY8 99 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 SMIM21Q3B7S5 101 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 DEFB105AQ8NG35 78 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 NDUFA4L2Q9NRX3 87 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 LINC01558Q9Y6Z2 57 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 MYOM3Q5VTT5 1437 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 COL6A5A8TX70 2615 aa-0.91□□□□□ -2.56
VPS50-217ENST00000485140 USP9XQ93008 2570 aaPredicted RBP-0.92□□□□□ -2.56
VPS50-217ENST00000485140 IGLC7A0M8Q6 106 aa-0.92□□□□□ -2.56
VPS50-217ENST00000485140 KRTAP20-1Q3LI63 56 aa-0.92□□□□□ -2.56
VPS50-217ENST00000485140 PFDN5Q99471 154 aa-0.92□□□□□ -2.56
VPS50-217ENST00000485140 NIPBLQ6KC79 2804 aaeCLIP-0.93□□□□□ -2.56
VPS50-217ENST00000485140 RAPGEF6Q8TEU7 1601 aa-0.93□□□□□ -2.56
VPS50-217ENST00000485140 PCNX1Q96RV3 2341 aa-0.93□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms