RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 TTC32Q5I0X7 151 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 Q6ZN92 141 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 SPATA12Q7Z6I5 190 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 HIST3H2BBQ8N257 126 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 OR5A1Q8NGJ0 315 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 SCGB3A1Q96QR1 104 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 Q9H8V8 135 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 CDC42SE2Q9NRR3 84 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-225ENST00000481502 TRAV12-1A0A0B4J245 112 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 TRAV8-4A0A0B4J246 113 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 IGKV2-29A2NJV5 120 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-225ENST00000481502 SNRPEP62304 92 aaKnown RBP5.63□□□□□ -1.51
SYNE1-225ENST00000481502 RBX1P62877 108 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 RPL39P62891 51 aaKnown RBP5.63□□□□□ -1.51
SYNE1-225ENST00000481502 ZFAND6Q6FIF0 208 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 FAM19A3Q7Z5A8 133 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 UBE2DNLQ8IWF7 75 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 ZNF664Q8N3J9 261 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 IFI27L1Q96BM0 104 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 AMELXQ99217 191 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 VCX2Q9H322 139 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 PRR34Q9NV39 138 aa5.63□□□□□ -1.51
SYNE1-225ENST00000481502 TRAV8-3A0A0A6YYJ7 113 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 GAGE6Q13070 117 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 PMVKQ15126 192 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 MIAQ16674 131 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 TEX43Q6ZNM6 134 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 FAM19A2Q8N3H0 131 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 C2orf88Q9BSF0 95 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 MAP1LC3CQ9BXW4 147 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 COX11Q9Y6N1 276 aa5.62□□□□□ -1.51
SYNE1-225ENST00000481502 IGLV4-3A0A075B6K6 122 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 IBA57-AS1B1ANH7 110 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 MPV17L2Q567V2 206 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 XP32Q5T750 250 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 PET117Q6UWS5 81 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 CSMD3Q7Z407 3707 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 WFDC10BQ8IUB3 73 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 HIST1H2BLQ99880 126 aa5.61□□□□□ -1.51
SYNE1-225ENST00000481502 DYNC2H1Q8NCM8 4307 aaKnown RBP5.6□□□□□ -1.51
SYNE1-225ENST00000481502 ANGP03950 147 aaKnown RBP5.6□□□□□ -1.51
SYNE1-225ENST00000481502 PRSS1P07477 247 aa5.6□□□□□ -1.51
SYNE1-225ENST00000481502 PMCHL1Q16048 86 aa5.6□□□□□ -1.51
SYNE1-225ENST00000481502 LINC00476Q8WZB0 136 aa5.6□□□□□ -1.51
SYNE1-225ENST00000481502 FAM104AQ969W3 186 aa5.6□□□□□ -1.51
SYNE1-225ENST00000481502 RMI2Q96E14 147 aa5.6□□□□□ -1.51
SYNE1-225ENST00000481502 IGLV4-60A0A075B6I1 120 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 SYS1-DBNDD2H3BUS1 97 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 CRPP02741 224 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 REG3AQ06141 175 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 SS18Q15532 418 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 NFE4Q86UQ8 179 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 LINC01561Q8N1V8 128 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 Q8N976 141 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 BAALCQ8WXS3 180 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 CST9LQ9H4G1 147 aa5.59□□□□□ -1.51
SYNE1-225ENST00000481502 NBDYA0A0U1RRE5 68 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 C20orf202A1L168 122 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 PRSS29PA6NIE9 313 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 F8VRH5 84 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 FABP4P15090 132 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 HERVK_113P63121 156 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 LINC00269Q8N2A0 174 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 DEFB104AQ8WTQ1 72 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 TM2D2Q9BX73 214 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 KLK12Q9UKR0 248 aa5.58□□□□□ -1.52
SYNE1-225ENST00000481502 TMA7Q9Y2S6 64 aaKnown RBP5.58□□□□□ -1.52
SYNE1-225ENST00000481502 LINC00959A0A1B0GUT2 108 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 TINCRA0A1B0GVN0 87 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 IFITM10A6NMD0 228 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 IGHV3-30P01768 117 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 IGHV3-33P01772 117 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 C3orf79P0CE67 100 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 IGHV3-30-3P0DP02 117 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 IGHV3-30-5P0DP03 117 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 PLNP26678 52 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 UBE2D1P51668 147 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 TNP2Q05952 138 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 LINC01545Q5VT33 79 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 ENHOQ6UWT2 76 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 Q6ZUT4 128 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 LINC00173Q6ZV60 143 aa5.57□□□□□ -1.52
SYNE1-225ENST00000481502 STARD9Q9P2P6 4700 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 IGLV5-45A0A087WSX0 123 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 LY6G6CO95867 125 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 IGLC3P0DOY3 106 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 ODF1Q14990 250 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 CD164L2Q6UWJ8 174 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 Q6ZR54 194 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 UBE2WQ96B02 151 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 C1orf43Q9BWL3 253 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 CHTOPQ9Y3Y2 248 aaKnown RBP5.56□□□□□ -1.52
SYNE1-225ENST00000481502 TENM2Q9NT68 2774 aa5.56□□□□□ -1.52
SYNE1-225ENST00000481502 LCE6AA0A183 80 aa5.55□□□□□ -1.52
SYNE1-225ENST00000481502 LINC00242Q5T6M2 205 aa5.55□□□□□ -1.52
SYNE1-225ENST00000481502 OPRPNQ99935 248 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-225ENST00000481502 GEMIN7Q9H840 131 aaKnown RBP5.55□□□□□ -1.52
SYNE1-225ENST00000481502 A0A087WZ39 114 aa5.54□□□□□ -1.52
SYNE1-225ENST00000481502 TRAV13-1A0A0B4J241 112 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms