RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 H3BUA1 57 aa13.62□□□□□ -0.23
CCDC88B-207ENST00000479965 FAM19A5Q7Z5A7 132 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-207ENST00000479965 K7EMT4 169 aa13.61□□□□□ -0.23
CCDC88B-207ENST00000479965 K7EQG2 157 aa13.61□□□□□ -0.23
CCDC88B-207ENST00000479965 IGKV3D-7A0A0C4DH55 119 aa13.6□□□□□ -0.23
CCDC88B-207ENST00000479965 J3KT08 172 aa13.6□□□□□ -0.23
CCDC88B-207ENST00000479965 PEMTQ9UBM1 199 aa13.6□□□□□ -0.23
CCDC88B-207ENST00000479965 LY6DQ14210 128 aa13.59□□□□□ -0.23
CCDC88B-207ENST00000479965 ABCA2Q9BZC7 2435 aa13.59□□□□□ -0.23
CCDC88B-207ENST00000479965 IGLV1-40P01703 118 aa13.58□□□□□ -0.24
CCDC88B-207ENST00000479965 TRACP01848 142 aa13.58□□□□□ -0.24
CCDC88B-207ENST00000479965 CSMD2Q7Z408 3487 aa13.58□□□□□ -0.24
CCDC88B-207ENST00000479965 DNAL4O96015 105 aa13.58□□□□□ -0.24
CCDC88B-207ENST00000479965 INAFM2P0DMQ5 153 aa13.58□□□□□ -0.24
CCDC88B-207ENST00000479965 IGHV3OR16-12A0A075B7B8 117 aa13.57□□□□□ -0.24
CCDC88B-207ENST00000479965 C5orf38Q86SI9 138 aa13.57□□□□□ -0.24
CCDC88B-207ENST00000479965 ATP5G1P05496 136 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 BEAN1Q3B7T3 259 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 LINC00242Q5T6M2 205 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 CYSTM1Q9H1C7 97 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 C14orf132Q9NPU4 83 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 C22orf24Q9Y442 160 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 HIVEP3Q5T1R4 2406 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 MALP21145 153 aa13.56□□□□□ -0.24
CCDC88B-207ENST00000479965 A6NDX4 124 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 DEFB131AP59861 70 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 A0A1B0GX51 115 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 A0A087WVE0 104 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 SMIM9A6NGZ8 99 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 CXCL5P42830 114 aa13.55□□□□□ -0.24
CCDC88B-207ENST00000479965 ATOX1O00244 68 aa13.54□□□□□ -0.24
CCDC88B-207ENST00000479965 COPS9Q8WXC6 57 aa13.54□□□□□ -0.24
CCDC88B-207ENST00000479965 K7ENP7 123 aa13.54□□□□□ -0.24
CCDC88B-207ENST00000479965 C2orf48Q96LS8 159 aa13.54□□□□□ -0.24
CCDC88B-207ENST00000479965 SMIM1B2RUZ4 78 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 CFHR3Q02985 330 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 C5orf47Q569G3 176 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 C9orf129Q5T035 196 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 LRRC75A-AS1Q8N1F1 130 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 IGHV4-61A0A0C4DH41 118 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 PIMREGQ9BSJ6 248 aa13.53□□□□□ -0.24
CCDC88B-207ENST00000479965 CRPP02741 224 aa13.52□□□□□ -0.24
CCDC88B-207ENST00000479965 HIST2H2BCQ6DN03 193 aa13.52□□□□□ -0.24
CCDC88B-207ENST00000479965 HIST2H2BDQ6DRA6 164 aa13.52□□□□□ -0.24
CCDC88B-207ENST00000479965 KIR2DL5BQ8NHK3 375 aa13.52□□□□□ -0.25
CCDC88B-207ENST00000479965 ZNF415Q09FC8 603 aa13.51□□□□□ -0.25
CCDC88B-207ENST00000479965 TOMM7Q9P0U1 55 aa13.51□□□□□ -0.25
CCDC88B-207ENST00000479965 IGLV5-45A0A087WSX0 123 aa13.51□□□□□ -0.25
CCDC88B-207ENST00000479965 IGLV5-39A0A0G2JS06 123 aa13.51□□□□□ -0.25
CCDC88B-207ENST00000479965 CRYGAP11844 174 aa13.5□□□□□ -0.25
CCDC88B-207ENST00000479965 IGKV3OR2-268A0A0C4DH90 116 aa13.5□□□□□ -0.25
CCDC88B-207ENST00000479965 A0A087WYN8 130 aa13.49□□□□□ -0.25
CCDC88B-207ENST00000479965 PSMB8P28062 276 aa13.49□□□□□ -0.25
CCDC88B-207ENST00000479965 RPL18AQ02543 176 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-207ENST00000479965 IGHV3-53P01767 116 aa13.48□□□□□ -0.25
CCDC88B-207ENST00000479965 FAM222AQ5U5X8 452 aa13.48□□□□□ -0.25
CCDC88B-207ENST00000479965 DSCR8Q96T75 97 aa13.48□□□□□ -0.25
CCDC88B-207ENST00000479965 LINC00846Q9NV44 126 aa13.48□□□□□ -0.25
CCDC88B-207ENST00000479965 MUC6Q6W4X9 2439 aa13.47□□□□□ -0.25
CCDC88B-207ENST00000479965 MIR7-3HGQ8N6C7 128 aa13.47□□□□□ -0.25
CCDC88B-207ENST00000479965 LINC00337Q8N6G1 96 aa13.47□□□□□ -0.25
CCDC88B-207ENST00000479965 OR13C6PQ8NH95 151 aa13.47□□□□□ -0.25
CCDC88B-207ENST00000479965 TRAV13-2A0A0B4J235 113 aa13.46□□□□□ -0.25
CCDC88B-207ENST00000479965 RBMY1BA6NDE4 496 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-207ENST00000479965 RBMY1EA6NEQ0 496 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-207ENST00000479965 RBMY1DP0C7P1 496 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-207ENST00000479965 HIST1H4AP62805 103 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-207ENST00000479965 SND1-IT1Q9HBX3 110 aa13.46□□□□□ -0.26
CCDC88B-207ENST00000479965 CELSR2Q9HCU4 2923 aa13.46□□□□□ -0.26
CCDC88B-207ENST00000479965 NCR3O14931 201 aa13.45□□□□□ -0.26
CCDC88B-207ENST00000479965 SLPIP03973 132 aa13.45□□□□□ -0.26
CCDC88B-207ENST00000479965 IGHV4-59P01825 116 aa13.44□□□□□ -0.26
CCDC88B-207ENST00000479965 LINC00158P58513 81 aa13.44□□□□□ -0.26
CCDC88B-207ENST00000479965 DEFB136Q30KP8 78 aa13.44□□□□□ -0.26
CCDC88B-207ENST00000479965 LECT2O14960 151 aa13.44□□□□□ -0.26
CCDC88B-207ENST00000479965 SMIM11BQ8TCY0 68 aa13.44□□□□□ -0.26
CCDC88B-207ENST00000479965 RPL28P46779 137 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-207ENST00000479965 Q96MF0 132 aa13.42□□□□□ -0.26
CCDC88B-207ENST00000479965 RNF152Q8N8N0 203 aa13.42□□□□□ -0.26
CCDC88B-207ENST00000479965 TRGV1A0A0A0MS02 117 aa13.42□□□□□ -0.26
CCDC88B-207ENST00000479965 SERP2Q8N6R1 65 aa13.42□□□□□ -0.26
CCDC88B-207ENST00000479965 AVPP01185 164 aa13.41□□□□□ -0.26
CCDC88B-207ENST00000479965 USP17L23D6RBM5 183 aa13.41□□□□□ -0.26
CCDC88B-207ENST00000479965 DPH3Q96FX2 82 aa13.41□□□□□ -0.26
CCDC88B-207ENST00000479965 XCL2Q9UBD3 114 aa13.41□□□□□ -0.26
CCDC88B-207ENST00000479965 IGKV2-28A0A075B6P5 120 aa13.4□□□□□ -0.26
CCDC88B-207ENST00000479965 IGKV2D-28P01615 120 aa13.4□□□□□ -0.26
CCDC88B-207ENST00000479965 PFN2P35080 140 aa13.4□□□□□ -0.26
CCDC88B-207ENST00000479965 SLURP1P55000 103 aa13.4□□□□□ -0.26
CCDC88B-207ENST00000479965 PRORYQ9H606 182 aa13.4□□□□□ -0.26
CCDC88B-207ENST00000479965 UBE2E2Q96LR5 201 aa13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 F5H768 121 aa13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 RPL36AP83881 106 aaKnown RBP13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 LINC01561Q8N1V8 128 aa13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 WFDC9Q8NEX5 89 aa13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 RPL36ALQ969Q0 106 aaKnown RBP13.39□□□□□ -0.27
CCDC88B-207ENST00000479965 UBE2L6O14933 153 aa13.38□□□□□ -0.27
CCDC88B-207ENST00000479965 NTM-AS1Q6ZSK4 140 aa13.38□□□□□ -0.27
CCDC88B-207ENST00000479965 C11orf72Q8NBR9 251 aa13.38□□□□□ -0.27
CCDC88B-207ENST00000479965 RPS28P62857 69 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms