RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PTH2Q96A98 100 aa10.7□□□□□ -0.7
HDAC6-220ENST00000477528 MIR7-3HGQ8N6C7 128 aa10.7□□□□□ -0.7
HDAC6-220ENST00000477528 C15orf53Q8NAA6 179 aa10.7□□□□□ -0.7
HDAC6-220ENST00000477528 PRUNE2Q8WUY3 3088 aa10.7□□□□□ -0.7
HDAC6-220ENST00000477528 ODF3L2Q3SX64 289 aa10.7□□□□□ -0.7
HDAC6-220ENST00000477528 CLEC2BQ92478 149 aa10.69□□□□□ -0.7
HDAC6-220ENST00000477528 DEFB4AO15263 64 aa10.69□□□□□ -0.7
HDAC6-220ENST00000477528 NDUFA1O15239 70 aa10.69□□□□□ -0.7
HDAC6-220ENST00000477528 HIST1H4AP62805 103 aaKnown RBP10.69□□□□□ -0.7
HDAC6-220ENST00000477528 RBX1P62877 108 aa10.69□□□□□ -0.7
HDAC6-220ENST00000477528 IGLV4-69A0A075B6H9 119 aa10.68□□□□□ -0.7
HDAC6-220ENST00000477528 MRPS36P82909 103 aaKnown RBP10.68□□□□□ -0.7
HDAC6-220ENST00000477528 HILS1P60008 231 aa10.68□□□□□ -0.7
HDAC6-220ENST00000477528 ACYP1P07311 99 aa10.68□□□□□ -0.7
HDAC6-220ENST00000477528 IGHV3-33P01772 117 aa10.68□□□□□ -0.7
HDAC6-220ENST00000477528 CXCL5P42830 114 aa10.68□□□□□ -0.7
HDAC6-220ENST00000477528 FAM19A4Q96LR4 140 aa10.67□□□□□ -0.7
HDAC6-220ENST00000477528 KIF25-AS1Q9Y6Z4 181 aa10.67□□□□□ -0.7
HDAC6-220ENST00000477528 LYRM9A8MSI8 78 aa10.67□□□□□ -0.7
HDAC6-220ENST00000477528 SPANXDQ9BXN6 97 aa10.67□□□□□ -0.7
HDAC6-220ENST00000477528 UBE2DNLQ8IWF7 75 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 ABCA2Q9BZC7 2435 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 TRBV6-8A0A0A6YYG3 113 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 ORMDL1Q9P0S3 153 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 TIMM17BO60830 172 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 FAM222AQ5U5X8 452 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 DOPEY1Q5JWR5 2465 aa10.66□□□□□ -0.7
HDAC6-220ENST00000477528 LINC00308Q8TCZ7 52 aa10.65□□□□□ -0.7
HDAC6-220ENST00000477528 WFDC10AQ9H1F0 79 aa10.65□□□□□ -0.7
HDAC6-220ENST00000477528 PKD1L2Q7Z442 2459 aa10.65□□□□□ -0.7
HDAC6-220ENST00000477528 LRRK2Q5S007 2527 aa10.65□□□□□ -0.7
HDAC6-220ENST00000477528 UFSP1Q6NVU6 142 aa10.65□□□□□ -0.71
HDAC6-220ENST00000477528 UBE2D1P51668 147 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 SPANXCQ9NY87 97 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 ZNF462Q96JM2 2506 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 TRIOO75962 3097 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 A8MZ25 164 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 TRBV30A0A0K0K1B3 111 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 EDA2RQ9HAV5 297 aa10.64□□□□□ -0.71
HDAC6-220ENST00000477528 NKAPP1Q8N9T2 125 aa10.63□□□□□ -0.71
HDAC6-220ENST00000477528 INAFM1C9JVW0 142 aa10.63□□□□□ -0.71
HDAC6-220ENST00000477528 ABCA12Q86UK0 2595 aa10.62□□□□□ -0.71
HDAC6-220ENST00000477528 UBE2D3P61077 147 aa10.62□□□□□ -0.71
HDAC6-220ENST00000477528 UBE2D2P62837 147 aa10.62□□□□□ -0.71
HDAC6-220ENST00000477528 TRIAP1O43715 76 aa10.62□□□□□ -0.71
HDAC6-220ENST00000477528 C1orf43Q9BWL3 253 aa10.62□□□□□ -0.71
HDAC6-220ENST00000477528 IGKV2D-24A0A075B6R9 120 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 BBC3Q96PG8 261 aaPredicted RBP10.61□□□□□ -0.71
HDAC6-220ENST00000477528 PSCAO43653 123 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 RMI2Q96E14 147 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 UBL5Q9BZL1 73 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 LY6G6DO95868 133 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 SPAG11BQ08648 103 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 NDUFA7O95182 113 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 Q8N2B8 174 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 CHCHD7Q9BUK0 85 aa10.61□□□□□ -0.71
HDAC6-220ENST00000477528 TRAV26-1A0A087WT03 109 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 LINC00315P59091 139 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 C1orf158Q8N1D5 194 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 CAMK2N2Q96S95 79 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 KLK12Q9UKR0 248 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 BEAN1Q3B7T3 259 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 TSPEAR-AS2P59090 65 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 LINC00269Q8N2A0 174 aa10.6□□□□□ -0.71
HDAC6-220ENST00000477528 IGLV1-51P01701 117 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 PLA2G2AP14555 144 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 LINC00482Q8N8I6 264 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 AMELXQ99217 191 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 IBA57-AS1B1ANH7 110 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 LECT2O14960 151 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 LOC100131303A0A0U1RQF7 123 aa10.59□□□□□ -0.71
HDAC6-220ENST00000477528 REG3AQ06141 175 aa10.58□□□□□ -0.72
HDAC6-220ENST00000477528 CDC42SE2Q9NRR3 84 aa10.58□□□□□ -0.72
HDAC6-220ENST00000477528 DSCR8Q96T75 97 aa10.58□□□□□ -0.72
HDAC6-220ENST00000477528 TMEM126AQ9H061 195 aa10.58□□□□□ -0.72
HDAC6-220ENST00000477528 C16orf95Q9H693 158 aa10.58□□□□□ -0.72
HDAC6-220ENST00000477528 ZFYVE26Q68DK2 2539 aa10.57□□□□□ -0.72
HDAC6-220ENST00000477528 MIFP14174 115 aa10.57□□□□□ -0.72
HDAC6-220ENST00000477528 SETD2Q9BYW2 2564 aaPredicted RBP10.57□□□□□ -0.72
HDAC6-220ENST00000477528 POM121L12Q8N7R1 296 aa10.57□□□□□ -0.72
HDAC6-220ENST00000477528 POLQO75417 2590 aa10.57□□□□□ -0.72
HDAC6-220ENST00000477528 LINC00242Q5T6M2 205 aa10.56□□□□□ -0.72
HDAC6-220ENST00000477528 CHCHD10Q8WYQ3 142 aaPredicted RBP10.56□□□□□ -0.72
HDAC6-220ENST00000477528 CLUHP3Q96NS8 147 aa10.56□□□□□ -0.72
HDAC6-220ENST00000477528 Q6ZSN1 163 aa10.55□□□□□ -0.72
HDAC6-220ENST00000477528 Q9HAA7 133 aa10.55□□□□□ -0.72
HDAC6-220ENST00000477528 TEX49A0A1B0GTD5 131 aa10.55□□□□□ -0.72
HDAC6-220ENST00000477528 SZT2Q5T011 3432 aa10.55□□□□□ -0.72
HDAC6-220ENST00000477528 NCR3O14931 201 aa10.54□□□□□ -0.72
HDAC6-220ENST00000477528 C9orf153Q5TBE3 101 aa10.54□□□□□ -0.72
HDAC6-220ENST00000477528 RBMY1FQ15415 496 aaKnown RBP10.54□□□□□ -0.72
HDAC6-220ENST00000477528 F8WEM9 126 aa10.54□□□□□ -0.72
HDAC6-220ENST00000477528 KIR2DL5BQ8NHK3 375 aa10.54□□□□□ -0.72
HDAC6-220ENST00000477528 ANKRD17O75179 2603 aaKnown RBP10.53□□□□□ -0.72
HDAC6-220ENST00000477528 TRACP01848 142 aa10.53□□□□□ -0.72
HDAC6-220ENST00000477528 CSDC2Q9Y534 153 aaKnown RBP10.53□□□□□ -0.72
HDAC6-220ENST00000477528 FAM110AQ9BQ89 295 aa10.53□□□□□ -0.72
HDAC6-220ENST00000477528 HAMPP81172 84 aa10.52□□□□□ -0.72
HDAC6-220ENST00000477528 IGHV4-28A0A0C4DH34 117 aa10.52□□□□□ -0.73
HDAC6-220ENST00000477528 JMJD7-PLA2G4BH0Y9G9 81 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms