RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 CRYBA4P53673 196 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 BVES-AS1Q5T3Y7 98 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 DAZ4Q86SG3 579 aaKnown RBP4.36□□□□□ -1.71
CLK1-210ENST00000473565 AMELXQ99217 191 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 DAZ3Q9NR90 486 aaKnown RBP4.36□□□□□ -1.71
CLK1-210ENST00000473565 PYGO1Q9Y3Y4 419 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 IGKV3OR2-268A0A0C4DH90 116 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 LINC01549A6NIU2 74 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 A8MZ25 164 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 SBSPONQ8IVN8 264 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 TRAV8-3A0A0A6YYJ7 113 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 LYRM9A8MSI8 78 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 F5H768 121 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 MIFP14174 115 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 PLEKHB2Q96CS7 222 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 SPANXA1Q9NS26 97 aa4.36□□□□□ -1.71
CLK1-210ENST00000473565 TRAV26-1A0A087WT03 109 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 E9PLD3 99 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 TMEM97Q5BJF2 176 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 VSIG2Q96IQ7 327 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 TMEM243Q9BU79 118 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 HUWE1Q7Z6Z7 4374 aaKnown RBP4.35□□□□□ -1.71
CLK1-210ENST00000473565 STAB2Q8WWQ8 2551 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 TRAV13-1A0A0B4J241 112 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 ZNF815PA8K554 130 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 UBE2L6O14933 153 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 PAX4O43316 350 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 AMMECR1LQ6DCA0 310 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 NFE4Q86UQ8 179 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 CHCHD5Q9BSY4 110 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 PRO0255Q9UI72 69 aa4.35□□□□□ -1.71
CLK1-210ENST00000473565 DLEU1O43261 78 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 COX6A2Q02221 97 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 COL5A1-AS1Q5SY13 56 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 SAMD5Q5TGI4 173 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 Q8N3U1 123 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 IGLV4-60A0A075B6I1 120 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 TRBV6-8A0A0A6YYG3 113 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 SPINK8P0C7L1 97 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 SPART-AS1P0CW21 52 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 GCSHP23434 173 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 LINC00469Q8N7U9 141 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 ATP6V0E2Q8NHE4 81 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 MRAPQ8TCY5 172 aa4.34□□□□□ -1.71
CLK1-210ENST00000473565 MYMXA0A1B0GTQ4 84 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 TMEM223A0PJW6 202 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 UBE2D1P51668 147 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 HERVK_113P61574 105 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 MRPS36P82909 103 aaKnown RBP4.34□□□□□ -1.72
CLK1-210ENST00000473565 LBHQ53QV2 105 aaPredicted RBP4.34□□□□□ -1.72
CLK1-210ENST00000473565 PAPPA-AS1Q5QFB9 102 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 MRPL52Q86TS9 123 aaKnown RBP4.34□□□□□ -1.72
CLK1-210ENST00000473565 OR5A1Q8NGJ0 315 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 CDKN2A-AS1Q9UH64 79 aa4.34□□□□□ -1.72
CLK1-210ENST00000473565 CIDEAO60543 219 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 ATP5G1P05496 136 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 FXYD2P54710 66 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 C12orf74Q32Q52 190 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 CLPSL2Q6UWE3 100 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 NAA38Q9BRA0 125 aaKnown RBP4.33□□□□□ -1.72
CLK1-210ENST00000473565 CDC42SE2Q9NRR3 84 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 DNHD1Q96M86 4753 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 J3QQQ9 107 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 SCGB1D4Q6XE38 83 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 GTSF1LQ9H1H1 148 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 A0A0J9YWU9 116 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 TMEM262E9PQX1 116 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 K7ERJ3 54 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 SIVA1O15304 175 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 HSD52Q0P140 79 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 DEFB121Q5J5C9 76 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 LINC00242Q5T6M2 205 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 TIMM21Q9BVV7 248 aa4.33□□□□□ -1.72
CLK1-210ENST00000473565 GEMIN7Q9H840 131 aaKnown RBP4.33□□□□□ -1.72
CLK1-210ENST00000473565 K7EIL1 84 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 Q6ZTC4 211 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 RAB37Q96AX2 223 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 TINCRA0A1B0GVN0 87 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 TAX1BP3O14907 124 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 IGHV3-30-3P0DP02 117 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 LGALS3P17931 250 aaKnown RBP4.32□□□□□ -1.72
CLK1-210ENST00000473565 NANOS2P60321 138 aaKnown RBP4.32□□□□□ -1.72
CLK1-210ENST00000473565 ORAOV1Q8WV07 137 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 HIST1H4GQ99525 98 aa4.32□□□□□ -1.72
CLK1-210ENST00000473565 TMEM101Q96IK0 257 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 HIGD1BQ9P298 99 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 DNAH9Q9NYC9 4486 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 LEPROTO15243 131 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 PTTG1IPP53801 180 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 C10orf126Q8N4M7 172 aa4.31□□□□□ -1.72
CLK1-210ENST00000473565 CSDC2Q9Y534 153 aaKnown RBP4.31□□□□□ -1.72
CLK1-210ENST00000473565 RBX1P62877 108 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 CEND1Q8N111 149 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 NHP2Q9NX24 153 aaKnown RBP4.3□□□□□ -1.72
CLK1-210ENST00000473565 TENM2Q9NT68 2774 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 IGHV1-58A0A0C4DH39 117 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 NPSP0C0P6 89 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 COX11Q9Y6N1 276 aa4.3□□□□□ -1.72
CLK1-210ENST00000473565 SRSF9Q13242 221 aaKnown RBP eCLIP4.29□□□□□ -1.72
CLK1-210ENST00000473565 ZNF625Q96I27 306 aaPredicted RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms