RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 CTAG1AP78358 180 aa12.68□□□□□ -0.38
SMC4-211ENST00000469858 TIMM21Q9BVV7 248 aa12.68□□□□□ -0.38
SMC4-211ENST00000469858 C11orf68Q9H3H3 251 aaKnown RBP12.68□□□□□ -0.38
SMC4-211ENST00000469858 TRBV6-8A0A0A6YYG3 113 aa12.67□□□□□ -0.38
SMC4-211ENST00000469858 C12orf74Q32Q52 190 aa12.67□□□□□ -0.38
SMC4-211ENST00000469858 PCP2Q8IVA1 136 aa12.67□□□□□ -0.38
SMC4-211ENST00000469858 NBEAL1Q6ZS30 2694 aa12.67□□□□□ -0.38
SMC4-211ENST00000469858 CHAC1Q9BUX1 264 aa12.67□□□□□ -0.38
SMC4-211ENST00000469858 MRPS36P82909 103 aaKnown RBP12.66□□□□□ -0.38
SMC4-211ENST00000469858 MRPL52Q86TS9 123 aaKnown RBP12.66□□□□□ -0.38
SMC4-211ENST00000469858 MRAPQ8TCY5 172 aa12.66□□□□□ -0.38
SMC4-211ENST00000469858 MGAM2Q2M2H8 2515 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 A0A0J9YWU9 116 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 A0A0J9YXV3 536 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 TMEM97Q5BJF2 176 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 TMEM170BQ5T4T1 132 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 AMMECR1LQ6DCA0 310 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 NFE4Q86UQ8 179 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 C2orf88Q9BSF0 95 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 TTTY13Q9BZ97 58 aa12.65□□□□□ -0.38
SMC4-211ENST00000469858 SMAGPQ0VAQ4 97 aa12.64□□□□□ -0.39
SMC4-211ENST00000469858 GAGE6Q13070 117 aa12.64□□□□□ -0.39
SMC4-211ENST00000469858 BOD1L2Q8IYS8 172 aa12.64□□□□□ -0.39
SMC4-211ENST00000469858 OR5A1Q8NGJ0 315 aa12.64□□□□□ -0.39
SMC4-211ENST00000469858 CHCHD5Q9BSY4 110 aa12.64□□□□□ -0.39
SMC4-211ENST00000469858 CSDC2Q9Y534 153 aaKnown RBP12.64□□□□□ -0.39
SMC4-211ENST00000469858 SPATA25Q9BR10 227 aa12.63□□□□□ -0.39
SMC4-211ENST00000469858 MRPS16Q9Y3D3 137 aaKnown RBP12.63□□□□□ -0.39
SMC4-211ENST00000469858 H7C423 109 aa12.63□□□□□ -0.39
SMC4-211ENST00000469858 LURAP1LQ8IV03 231 aa12.63□□□□□ -0.39
SMC4-211ENST00000469858 TRAV8-6A0A0B4J262 113 aa12.62□□□□□ -0.39
SMC4-211ENST00000469858 EREGO14944 169 aa12.62□□□□□ -0.39
SMC4-211ENST00000469858 TENM3Q9P273 2699 aa12.62□□□□□ -0.39
SMC4-211ENST00000469858 E9PLD3 99 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 HERVK_113P61574 105 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 Q6ZTC4 211 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 TMEM101Q96IK0 257 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 TM2D3Q9BRN9 247 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 SNHG12Q9BXW3 62 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 M0R143 59 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 ZNF22P17026 224 aaPredicted RBP12.61□□□□□ -0.39
SMC4-211ENST00000469858 C2orf91Q6ZV80 131 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 CDC42SE2Q9NRR3 84 aa12.61□□□□□ -0.39
SMC4-211ENST00000469858 DLEU1O43261 78 aa12.6□□□□□ -0.39
SMC4-211ENST00000469858 UBE2D1P51668 147 aa12.6□□□□□ -0.39
SMC4-211ENST00000469858 MRPL23Q16540 153 aaKnown RBP12.6□□□□□ -0.39
SMC4-211ENST00000469858 ICOSQ9Y6W8 199 aa12.6□□□□□ -0.39
SMC4-211ENST00000469858 ZNF25P17030 456 aaPredicted RBP12.59□□□□□ -0.39
SMC4-211ENST00000469858 BATFQ16520 125 aa12.59□□□□□ -0.39
SMC4-211ENST00000469858 NANOS2P60321 138 aaKnown RBP12.58□□□□□ -0.4
SMC4-211ENST00000469858 MAPKAPK5-AS1Q8N8E1 139 aa12.58□□□□□ -0.4
SMC4-211ENST00000469858 C11orf45Q8TAV5 145 aa12.58□□□□□ -0.4
SMC4-211ENST00000469858 TINCRA0A1B0GVN0 87 aa12.58□□□□□ -0.4
SMC4-211ENST00000469858 IGLV4-60A0A075B6I1 120 aa12.57□□□□□ -0.4
SMC4-211ENST00000469858 TRAV13-1A0A0B4J241 112 aa12.57□□□□□ -0.4
SMC4-211ENST00000469858 TMEM223A0PJW6 202 aa12.57□□□□□ -0.4
SMC4-211ENST00000469858 GEMIN7Q9H840 131 aaKnown RBP12.57□□□□□ -0.4
SMC4-211ENST00000469858 HINT1P49773 126 aaPredicted RBP12.56□□□□□ -0.4
SMC4-211ENST00000469858 IGHV3-64A0A075B6Q5 118 aa12.56□□□□□ -0.4
SMC4-211ENST00000469858 TMEM262E9PQX1 116 aa12.56□□□□□ -0.4
SMC4-211ENST00000469858 LINC00469Q8N7U9 141 aa12.55□□□□□ -0.4
SMC4-211ENST00000469858 SIVA1O15304 175 aa12.54□□□□□ -0.4
SMC4-211ENST00000469858 MPV17L2Q567V2 206 aa12.54□□□□□ -0.4
SMC4-211ENST00000469858 SH2D6Q7Z4S9 175 aa12.54□□□□□ -0.4
SMC4-211ENST00000469858 LINC00242Q5T6M2 205 aa12.54□□□□□ -0.4
SMC4-211ENST00000469858 MYMXA0A1B0GTQ4 84 aa12.53□□□□□ -0.4
SMC4-211ENST00000469858 TSPEAR-AS2P59090 65 aa12.53□□□□□ -0.4
SMC4-211ENST00000469858 COX6A2Q02221 97 aa12.53□□□□□ -0.4
SMC4-211ENST00000469858 IGKV3OR2-268A0A0C4DH90 116 aa12.52□□□□□ -0.4
SMC4-211ENST00000469858 ZNF815PA8K554 130 aa12.52□□□□□ -0.4
SMC4-211ENST00000469858 TIRAPP58753 221 aa12.52□□□□□ -0.4
SMC4-211ENST00000469858 DEFB131BA0A096LNP1 70 aa12.52□□□□□ -0.41
SMC4-211ENST00000469858 RBX1P62877 108 aa12.52□□□□□ -0.41
SMC4-211ENST00000469858 HERVK_113P63121 156 aa12.52□□□□□ -0.41
SMC4-211ENST00000469858 SEC11AP67812 179 aa12.52□□□□□ -0.41
SMC4-211ENST00000469858 CDKN2A-AS1Q9UH64 79 aa12.52□□□□□ -0.41
SMC4-211ENST00000469858 TRAV8-3A0A0A6YYJ7 113 aa12.51□□□□□ -0.41
SMC4-211ENST00000469858 H3BNG1 76 aa12.51□□□□□ -0.41
SMC4-211ENST00000469858 J3QQQ9 107 aa12.51□□□□□ -0.41
SMC4-211ENST00000469858 SPINK8P0C7L1 97 aa12.51□□□□□ -0.41
SMC4-211ENST00000469858 FAM19A3Q7Z5A8 133 aa12.51□□□□□ -0.41
SMC4-211ENST00000469858 IGLV5-45A0A087WSX0 123 aa12.5□□□□□ -0.41
SMC4-211ENST00000469858 LEPROTO15243 131 aa12.5□□□□□ -0.41
SMC4-211ENST00000469858 LGALS3P17931 250 aaKnown RBP12.5□□□□□ -0.41
SMC4-211ENST00000469858 LBHQ53QV2 105 aaPredicted RBP12.5□□□□□ -0.41
SMC4-211ENST00000469858 A0A1B0GUV1 79 aa12.5□□□□□ -0.41
SMC4-211ENST00000469858 LELP1Q5T871 98 aa12.5□□□□□ -0.41
SMC4-211ENST00000469858 HIGD1BQ9P298 99 aa12.5□□□□□ -0.41
SMC4-211ENST00000469858 HUWE1Q7Z6Z7 4374 aaKnown RBP12.49□□□□□ -0.41
SMC4-211ENST00000469858 H3BRM9 83 aa12.49□□□□□ -0.41
SMC4-211ENST00000469858 IGHV3-30-3P0DP02 117 aa12.49□□□□□ -0.41
SMC4-211ENST00000469858 BVES-AS1Q5T3Y7 98 aa12.49□□□□□ -0.41
SMC4-211ENST00000469858 IGHV1-58A0A0C4DH39 117 aa12.48□□□□□ -0.41
SMC4-211ENST00000469858 HSD52Q0P140 79 aa12.48□□□□□ -0.41
SMC4-211ENST00000469858 LYPD5Q6UWN5 251 aa12.48□□□□□ -0.41
SMC4-211ENST00000469858 Q8N3U1 123 aa12.48□□□□□ -0.41
SMC4-211ENST00000469858 PLEKHB2Q96CS7 222 aa12.48□□□□□ -0.41
SMC4-211ENST00000469858 SCGB1D4Q6XE38 83 aa12.47□□□□□ -0.41
SMC4-211ENST00000469858 CLPSL2Q6UWE3 100 aa12.47□□□□□ -0.41
SMC4-211ENST00000469858 TRAV10A0A0B4J240 114 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms