RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TDRG1Q3Y452 100 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 DEFB125Q8N687 156 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 NUP35Q8NFH5 326 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 OR2D3Q8NGH3 330 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TSKUQ8WUA8 353 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 C20orf144Q9BQM9 153 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TM2D3Q9BRN9 247 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 EDA2RQ9HAV5 297 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 URGCP-MRPS24S4R325 110 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TRAV12-3A0A0B4J271 114 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 A0A1B0GVX0 72 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 A0A1B0GXF2 115 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 ORM1P02763 201 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 TYMSP04818 313 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 OR5AL1P0C617 328 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 RNASE3P12724 160 aaKnown RBP2.55□□□□□ -2
SYNE1-218ENST00000468937 RNASE4P34096 147 aaKnown RBP2.55□□□□□ -2
SYNE1-218ENST00000468937 TCL1AP56279 114 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 FXYD7P58549 80 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 RPS20P60866 119 aaKnown RBP2.55□□□□□ -2
SYNE1-218ENST00000468937 MORN3Q6PF18 240 aaPredicted RBP2.55□□□□□ -2
SYNE1-218ENST00000468937 SBSPONQ8IVN8 264 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 C1orf158Q8N1D5 194 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 GATD1Q8NB37 220 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 LINC00467Q9BRT7 94 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 CNFNQ9BYD5 112 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 NAT8BQ9UHF3 227 aa2.55□□□□□ -2
SYNE1-218ENST00000468937 TMSB15BA0A087X1C1 80 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 GRIFINA4D1Z8 144 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 H3BVH4 76 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 GNRH2O43555 120 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 PRM2P04554 102 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 ARMS2P0C7Q2 107 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 RAB5AP20339 215 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 S100PP25815 95 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 NUTF2P61970 127 aaKnown RBP2.54□□□□□ -2
SYNE1-218ENST00000468937 MRPL54Q6P161 138 aaKnown RBP2.54□□□□□ -2
SYNE1-218ENST00000468937 RASL11AQ6T310 242 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 LYZL1Q6UWQ5 148 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 ZNF705AQ6ZN79 300 aaPredicted RBP2.54□□□□□ -2
SYNE1-218ENST00000468937 ATP5L2Q7Z4Y8 100 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 TMEM256Q8N2U0 113 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 FER1L6-AS1Q8NA97 138 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 C11orf72Q8NBR9 251 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 BTF3L4Q96K17 158 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 KCNS1Q96KK3 526 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 NAGKQ9UJ70 344 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 RYR1P21817 5038 aa2.54□□□□□ -2
SYNE1-218ENST00000468937 PKD1P98161 4303 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 FAT2Q9NYQ8 4349 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 LOC102724200A0A096LPH7 203 aaPredicted RBP2.53□□□□□ -2
SYNE1-218ENST00000468937 A0A1B0GUT8 65 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 F2Z2F3 143 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 SPINK4O60575 86 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 NTF3P20783 257 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 ASIPP42127 132 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 HBBP68871 147 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 ZNF493Q6ZR52 646 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 TMEM136Q6ZRR5 245 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.53□□□□□ -2
SYNE1-218ENST00000468937 OR10AG1Q8NH19 301 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 GNB1LQ9BYB4 327 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 DNAH17Q9UFH2 4485 aa2.53□□□□□ -2
SYNE1-218ENST00000468937 HERC2O95714 4834 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 VPS13DQ5THJ4 4388 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 MUC21A0A0G2JKD1 596 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 MUC21A0A140T8X8 626 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 A0A1B0GW15 77 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 HLA-DQA1P01909 254 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 MT-ND6P03923 174 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 TRGC2P03986 189 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 DEFB135Q30KP9 77 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 TMEM263Q8WUH6 116 aaKnown RBP2.52□□□□□ -2.01
SYNE1-218ENST00000468937 PTH2Q96A98 100 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 LINC01587Q99440 93 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 CHAC1Q9BUX1 264 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 TMEM191AQ9H0A3 160 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 GOLT1BQ9Y3E0 138 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 PCLOQ9Y6V0 5065 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 DNAH2Q9P225 4427 aa2.52□□□□□ -2.01
SYNE1-218ENST00000468937 DMBT1Q9UGM3 2413 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-218ENST00000468937 NUPR2A6NF83 97 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 M0R381 172 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BKO60814 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BJP06899 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HTN1P15515 57 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 EVI2AP22794 236 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BOP23527 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 S100A4P26447 101 aaKnown RBP2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BBP33778 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BDP58876 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BCP62807 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 FABP9Q0Z7S8 132 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST2H2BEQ16778 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 RRN3P1Q2M238 152 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 MRPL51Q4U2R6 128 aaKnown RBP2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-218ENST00000468937 SPANXN1Q5VSR9 72 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 FAM104BQ5XKR9 115 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 ZFAND6Q6FIF0 208 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms