RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 IGHV1-58A0A0C4DH39 117 aa6.41□□□□□ -1.38
SYNE1-217ENST00000466159 GTSF1LQ9H1H1 148 aa6.41□□□□□ -1.38
SYNE1-217ENST00000466159 NOP10Q9NPE3 64 aaKnown RBP6.41□□□□□ -1.38
SYNE1-217ENST00000466159 PRO1854Q9UHT4 67 aa6.41□□□□□ -1.38
SYNE1-217ENST00000466159 RPL35AP18077 110 aaKnown RBP6.41□□□□□ -1.38
SYNE1-217ENST00000466159 TMEM263Q8WUH6 116 aaKnown RBP6.41□□□□□ -1.38
SYNE1-217ENST00000466159 LINC00694P0DN24 101 aa6.4□□□□□ -1.38
SYNE1-217ENST00000466159 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-217ENST00000466159 VSIG2Q96IQ7 327 aa6.4□□□□□ -1.38
SYNE1-217ENST00000466159 LITAFQ99732 161 aa6.4□□□□□ -1.38
SYNE1-217ENST00000466159 GEMIN7Q9H840 131 aaKnown RBP6.4□□□□□ -1.38
SYNE1-217ENST00000466159 TCL1BO95988 128 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 SMCPP49901 116 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-217ENST00000466159 SMAGPQ0VAQ4 97 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 DGAT2L7PQ6IED9 249 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 C19orf73Q9NVV2 129 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 CDKN2A-AS1Q9UH64 79 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 NDUFA12Q9UI09 145 aa6.4□□□□□ -1.39
SYNE1-217ENST00000466159 K7EQD1 137 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 IGLV1-51P01701 117 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 INSL3P51460 131 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 COX6A2Q02221 97 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 ADAMTSL4-AS1Q5T5F5 129 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 NTM-AS1Q6ZSK4 140 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 SMR3AQ99954 134 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 TRAV4A0A0B4J268 109 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 PLAC8L1A1L4L8 177 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE12HA6NDE8 117 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE12JA6NER3 117 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 H7C2G1 150 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 NDUFA7O95182 113 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 PRSS2P07478 247 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 RPL36AP83881 106 aaKnown RBP6.39□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE4Q13068 117 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE5Q13069 117 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 ZNF418Q8TF45 676 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-217ENST00000466159 RPL36ALQ969Q0 106 aaKnown RBP6.39□□□□□ -1.39
SYNE1-217ENST00000466159 UNC79Q9P2D8 2635 aa6.39□□□□□ -1.39
SYNE1-217ENST00000466159 A0A1B0GV72 72 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 IGHV3-33P01772 117 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 SCGB1C2P0DMR2 95 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 SPATA25Q9BR10 227 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE7O76087 117 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE12FP0CL80 117 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE12GP0CL81 117 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 GAGE12IP0CL82 117 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 HILS1P60008 231 aa6.38□□□□□ -1.39
SYNE1-217ENST00000466159 FASNP49327 2511 aaKnown RBP6.38□□□□□ -1.39
SYNE1-217ENST00000466159 A0A0B4J2C4 111 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 TRBV10-1A0A0K0K1A3 114 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 NPC2P61916 151 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 DAZ2Q13117 558 aaKnown RBP6.37□□□□□ -1.39
SYNE1-217ENST00000466159 LYRM7Q5U5X0 104 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 BAHCC1Q9P281 2608 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 CMC4P56277 68 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-217ENST00000466159 TIRAPP58753 221 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 LINC00242Q5T6M2 205 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 ZFAND6Q6FIF0 208 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 DAZ4Q86SG3 579 aaKnown RBP6.37□□□□□ -1.39
SYNE1-217ENST00000466159 CSNK1G2-AS1Q8NCQ2 148 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 TMEM101Q96IK0 257 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 DAZ3Q9NR90 486 aaKnown RBP6.37□□□□□ -1.39
SYNE1-217ENST00000466159 ERG28Q9UKR5 140 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 HIVEP2P31629 2446 aa6.37□□□□□ -1.39
SYNE1-217ENST00000466159 TRGV2A0A075B6R0 118 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 IGLV5-45A0A087WSX0 123 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 LOC100131303A0A0U1RQF7 123 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 C16orf74Q96GX8 76 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 TRBV20-1A0A075B6N2 111 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-217ENST00000466159 TRAV13-1A0A0B4J241 112 aa6.36□□□□□ -1.39
SYNE1-217ENST00000466159 J3QR89 54 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 KRTAP10-3P60369 221 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 SBSPONQ8IVN8 264 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 DAND5Q8N907 189 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 FAM110AQ9BQ89 295 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 SPANXDQ9BXN6 97 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 SPANXCQ9NY87 97 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 MIAQ16674 131 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 Q1RN00 199 aa6.35□□□□□ -1.39
SYNE1-217ENST00000466159 HERVK_113P63121 156 aa6.34□□□□□ -1.39
SYNE1-217ENST00000466159 FOXI1Q12951 378 aa6.34□□□□□ -1.39
SYNE1-217ENST00000466159 C1QTNF4Q9BXJ3 329 aa6.34□□□□□ -1.39
SYNE1-217ENST00000466159 CDC42SE2Q9NRR3 84 aa6.34□□□□□ -1.39
SYNE1-217ENST00000466159 CSDC2Q9Y534 153 aaKnown RBP6.34□□□□□ -1.39
SYNE1-217ENST00000466159 FN1P02751 2386 aaKnown RBP6.34□□□□□ -1.39
SYNE1-217ENST00000466159 CKS1BP61024 79 aa6.34□□□□□ -1.39
SYNE1-217ENST00000466159 ZNF625Q96I27 306 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-217ENST00000466159 NDUFA1O15239 70 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 OVOL2Q9BRP0 275 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 TRGV4A0A0C4DH28 118 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 IGLV5-39A0A0G2JS06 123 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 SMIM1B2RUZ4 78 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 Q9H8V8 135 aa6.33□□□□□ -1.4
SYNE1-217ENST00000466159 A0A0U1RRA0 63 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 TRBV6-4A0A1B0GX49 114 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 UBE2L6O14933 153 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 TRIAP1O43715 76 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 FAM19A3Q7Z5A8 133 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 ATP6V0E2Q8NHE4 81 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms