RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 RPL36AP83881 106 aaKnown RBP13.18□□□□□ -0.3
SYNE4-204ENST00000465425 ADAMTSL4-AS1Q5T5F5 129 aa13.18□□□□□ -0.3
SYNE4-204ENST00000465425 ZFAND6Q6FIF0 208 aa13.18□□□□□ -0.3
SYNE4-204ENST00000465425 IL17DQ8TAD2 202 aa13.18□□□□□ -0.3
SYNE4-204ENST00000465425 RPL36ALQ969Q0 106 aaKnown RBP13.18□□□□□ -0.3
SYNE4-204ENST00000465425 ESM1Q9NQ30 184 aa13.18□□□□□ -0.3
SYNE4-204ENST00000465425 SCGB1A1P11684 91 aa13.17□□□□□ -0.3
SYNE4-204ENST00000465425 MIAQ16674 131 aa13.17□□□□□ -0.3
SYNE4-204ENST00000465425 SBSPONQ8IVN8 264 aa13.17□□□□□ -0.3
SYNE4-204ENST00000465425 TIRAPP58753 221 aa13.17□□□□□ -0.3
SYNE4-204ENST00000465425 CITED2Q99967 270 aaPredicted RBP13.17□□□□□ -0.3
SYNE4-204ENST00000465425 C9JAW5 83 aa13.16□□□□□ -0.3
SYNE4-204ENST00000465425 K7EQD1 137 aa13.16□□□□□ -0.3
SYNE4-204ENST00000465425 SLC25A20O43772 301 aa13.16□□□□□ -0.3
SYNE4-204ENST00000465425 NPC2P61916 151 aa13.16□□□□□ -0.3
SYNE4-204ENST00000465425 Q6ZTI0 123 aa13.16□□□□□ -0.3
SYNE4-204ENST00000465425 NF1P21359 2839 aa13.15□□□□□ -0.3
SYNE4-204ENST00000465425 TRBV10-1A0A0K0K1A3 114 aa13.15□□□□□ -0.3
SYNE4-204ENST00000465425 NBPF19A0A087WUL8 3843 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 HERVK_113P63121 156 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 ATXN8Q156A1 80 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 ANKRD29Q8N6D5 301 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 YAE1D1Q9NRH1 226 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 IGLV5-45A0A087WSX0 123 aa13.14□□□□□ -0.31
SYNE4-204ENST00000465425 DAZ2Q13117 558 aaKnown RBP13.14□□□□□ -0.31
SYNE4-204ENST00000465425 DAZ4Q86SG3 579 aaKnown RBP13.14□□□□□ -0.31
SYNE4-204ENST00000465425 DAZ3Q9NR90 486 aaKnown RBP13.14□□□□□ -0.31
SYNE4-204ENST00000465425 TRAV4A0A0B4J268 109 aa13.13□□□□□ -0.31
SYNE4-204ENST00000465425 TMEM101Q96IK0 257 aa13.13□□□□□ -0.31
SYNE4-204ENST00000465425 TRBV30A0A0K0K1B3 111 aa13.13□□□□□ -0.31
SYNE4-204ENST00000465425 CARD19Q96LW7 228 aa13.13□□□□□ -0.31
SYNE4-204ENST00000465425 NOP10Q9NPE3 64 aaKnown RBP13.13□□□□□ -0.31
SYNE4-204ENST00000465425 CCDC168Q8NDH2 2452 aa13.13□□□□□ -0.31
SYNE4-204ENST00000465425 TRIAP1O43715 76 aa13.12□□□□□ -0.31
SYNE4-204ENST00000465425 TIMM17BO60830 172 aa13.12□□□□□ -0.31
SYNE4-204ENST00000465425 LINC00694P0DN24 101 aa13.12□□□□□ -0.31
SYNE4-204ENST00000465425 CMC4P56277 68 aaPredicted RBP13.12□□□□□ -0.31
SYNE4-204ENST00000465425 NDUFA1O15239 70 aa13.12□□□□□ -0.31
SYNE4-204ENST00000465425 COX6A2Q02221 97 aa13.12□□□□□ -0.31
SYNE4-204ENST00000465425 CIRBPQ14011 172 aaKnown RBP13.12□□□□□ -0.31
SYNE4-204ENST00000465425 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.12□□□□□ -0.31
SYNE4-204ENST00000465425 FLNAP21333 2647 aaKnown RBP13.12□□□□□ -0.31
SYNE4-204ENST00000465425 CUBNO60494 3623 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 GAGE12JA6NER3 117 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 IFITM1P13164 125 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 GAGE4Q13068 117 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 GAGE5Q13069 117 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 LINC00242Q5T6M2 205 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 LINC01006Q8NI28 216 aa13.11□□□□□ -0.31
SYNE4-204ENST00000465425 CSDC2Q9Y534 153 aaKnown RBP13.11□□□□□ -0.31
SYNE4-204ENST00000465425 TRAV13-1A0A0B4J241 112 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 COX6CP09669 75 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 ICOSQ9Y6W8 199 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 M0QXV9 152 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 DAND5Q8N907 189 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 RNF183Q96D59 192 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 CDIP1Q9H305 208 aa13.1□□□□□ -0.31
SYNE4-204ENST00000465425 LINC01620Q4KN68 170 aa13.09□□□□□ -0.31
SYNE4-204ENST00000465425 NTM-AS1Q6ZSK4 140 aa13.09□□□□□ -0.31
SYNE4-204ENST00000465425 TRGV2A0A075B6R0 118 aa13.08□□□□□ -0.31
SYNE4-204ENST00000465425 C16orf74Q96GX8 76 aa13.08□□□□□ -0.31
SYNE4-204ENST00000465425 Q9H8V8 135 aa13.08□□□□□ -0.31
SYNE4-204ENST00000465425 NDUFA7O95182 113 aa13.08□□□□□ -0.32
SYNE4-204ENST00000465425 IGLV5-39A0A0G2JS06 123 aa13.07□□□□□ -0.32
SYNE4-204ENST00000465425 UBE2L6O14933 153 aa13.07□□□□□ -0.32
SYNE4-204ENST00000465425 RPL35AP18077 110 aaKnown RBP13.07□□□□□ -0.32
SYNE4-204ENST00000465425 WFDC10AQ9H1F0 79 aa13.07□□□□□ -0.32
SYNE4-204ENST00000465425 SETD2Q9BYW2 2564 aaPredicted RBP13.07□□□□□ -0.32
SYNE4-204ENST00000465425 HIST2H2BCQ6DN03 193 aa13.07□□□□□ -0.32
SYNE4-204ENST00000465425 NOTCH3Q9UM47 2321 aa13.07□□□□□ -0.32
SYNE4-204ENST00000465425 GAGE7O76087 117 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 RNASE1P07998 156 aaKnown RBP13.06□□□□□ -0.32
SYNE4-204ENST00000465425 GAGE12FP0CL80 117 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 GAGE12GP0CL81 117 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 GAGE12IP0CL82 117 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 FAM19A3Q7Z5A8 133 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 GIG44P09565 113 aaPredicted RBP13.06□□□□□ -0.32
SYNE4-204ENST00000465425 ZNF625Q96I27 306 aaPredicted RBP13.06□□□□□ -0.32
SYNE4-204ENST00000465425 C16orf95Q9H693 158 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 CDC42SE2Q9NRR3 84 aa13.06□□□□□ -0.32
SYNE4-204ENST00000465425 SMIM1B2RUZ4 78 aa13.05□□□□□ -0.32
SYNE4-204ENST00000465425 RPL13AP40429 203 aaKnown RBP13.05□□□□□ -0.32
SYNE4-204ENST00000465425 TMEM243Q9BU79 118 aa13.05□□□□□ -0.32
SYNE4-204ENST00000465425 NIPBLQ6KC79 2804 aaeCLIP13.04□□□□□ -0.32
SYNE4-204ENST00000465425 TRBV10-2A0A0K0K1G8 114 aa13.04□□□□□ -0.32
SYNE4-204ENST00000465425 TMEM262E9PQX1 116 aa13.04□□□□□ -0.32
SYNE4-204ENST00000465425 IGLV1-51P01701 117 aa13.04□□□□□ -0.32
SYNE4-204ENST00000465425 FAM110AQ9BQ89 295 aa13.04□□□□□ -0.32
SYNE4-204ENST00000465425 A0A0U1RRA0 63 aa13.03□□□□□ -0.32
SYNE4-204ENST00000465425 NTN5Q8WTR8 489 aaPredicted RBP13.03□□□□□ -0.32
SYNE4-204ENST00000465425 COPS9Q8WXC6 57 aa13.03□□□□□ -0.32
SYNE4-204ENST00000465425 PLAC8L1A1L4L8 177 aa13.02□□□□□ -0.32
SYNE4-204ENST00000465425 CIDEAO60543 219 aa13.02□□□□□ -0.32
SYNE4-204ENST00000465425 PRIMA1Q86XR5 153 aa13.02□□□□□ -0.32
SYNE4-204ENST00000465425 LINC00308Q8TCZ7 52 aa13.02□□□□□ -0.32
SYNE4-204ENST00000465425 JMJD1CQ15652 2540 aa13.02□□□□□ -0.33
SYNE4-204ENST00000465425 TRGV4A0A0C4DH28 118 aa13.02□□□□□ -0.33
SYNE4-204ENST00000465425 KRTAP1-1Q07627 177 aa13.02□□□□□ -0.33
SYNE4-204ENST00000465425 MEIG1Q5JSS6 88 aa13.02□□□□□ -0.33
SYNE4-204ENST00000465425 XGP55808 180 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms