RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 RMI2Q96E14 147 aa11.8□□□□□ -0.52
CPSF4-209ENST00000465132 TIMM21Q9BVV7 248 aa11.8□□□□□ -0.52
CPSF4-209ENST00000465132 CYSLTR1Q9Y271 337 aa11.8□□□□□ -0.52
CPSF4-209ENST00000465132 CSDC2Q9Y534 153 aaKnown RBP11.8□□□□□ -0.52
CPSF4-209ENST00000465132 ANGP03950 147 aaKnown RBP11.79□□□□□ -0.52
CPSF4-209ENST00000465132 LINC00614P0C842 121 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 FGF6P10767 208 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 Q8N1X5 172 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 OR5A1Q8NGJ0 315 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 SPANXA1Q9NS26 97 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 DNAH5Q8TE73 4624 aa11.79□□□□□ -0.52
CPSF4-209ENST00000465132 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-209ENST00000465132 IGKV2-29A2NJV5 120 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-209ENST00000465132 LINC01546A6NGU7 62 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 IBA57-AS1B1ANH7 110 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 RBX1P62877 108 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 MPV17L2Q567V2 206 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 PAPPA-AS1Q5QFB9 102 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 BAGE3Q86Y29 109 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 DEFB104AQ8WTQ1 72 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 CHCHD1Q96BP2 118 aaKnown RBP11.78□□□□□ -0.52
CPSF4-209ENST00000465132 COX11Q9Y6N1 276 aa11.78□□□□□ -0.52
CPSF4-209ENST00000465132 APOBP04114 4563 aaKnown RBP11.77□□□□□ -0.52
CPSF4-209ENST00000465132 NPSP0C0P6 89 aa11.77□□□□□ -0.53
CPSF4-209ENST00000465132 C1orf196B1AJZ1 125 aa11.76□□□□□ -0.53
CPSF4-209ENST00000465132 KRTAP10-2P60368 255 aa11.76□□□□□ -0.53
CPSF4-209ENST00000465132 KLK12Q9UKR0 248 aa11.76□□□□□ -0.53
CPSF4-209ENST00000465132 C2orf66Q6UXQ4 117 aa11.75□□□□□ -0.53
CPSF4-209ENST00000465132 TM2D2Q9BX73 214 aa11.75□□□□□ -0.53
CPSF4-209ENST00000465132 PYGO1Q9Y3Y4 419 aa11.75□□□□□ -0.53
CPSF4-209ENST00000465132 MIAQ16674 131 aa11.74□□□□□ -0.53
CPSF4-209ENST00000465132 Q6ZN92 141 aa11.74□□□□□ -0.53
CPSF4-209ENST00000465132 Q8N976 141 aa11.74□□□□□ -0.53
CPSF4-209ENST00000465132 UBE2D4Q9Y2X8 147 aa11.74□□□□□ -0.53
CPSF4-209ENST00000465132 TRAV8-4A0A0B4J246 113 aa11.73□□□□□ -0.53
CPSF4-209ENST00000465132 CCL25O15444 150 aa11.73□□□□□ -0.53
CPSF4-209ENST00000465132 ZNF664Q8N3J9 261 aa11.73□□□□□ -0.53
CPSF4-209ENST00000465132 HSBP1O75506 76 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 MRPS36P82909 103 aaKnown RBP11.72□□□□□ -0.53
CPSF4-209ENST00000465132 REG3AQ06141 175 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 LINC00269Q8N2A0 174 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 UBE2WQ96B02 151 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 TOMM6Q96B49 74 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 TMEM141Q96I45 108 aa11.72□□□□□ -0.53
CPSF4-209ENST00000465132 HBDP02042 147 aa11.71□□□□□ -0.53
CPSF4-209ENST00000465132 CDC42SE2Q9NRR3 84 aa11.71□□□□□ -0.53
CPSF4-209ENST00000465132 PRR34Q9NV39 138 aa11.71□□□□□ -0.53
CPSF4-209ENST00000465132 RPL39P62891 51 aaKnown RBP11.7□□□□□ -0.54
CPSF4-209ENST00000465132 ERASQ7Z444 233 aa11.7□□□□□ -0.54
CPSF4-209ENST00000465132 SCGB3A1Q96QR1 104 aa11.7□□□□□ -0.54
CPSF4-209ENST00000465132 TIMM17AQ99595 171 aa11.7□□□□□ -0.54
CPSF4-209ENST00000465132 C1orf43Q9BWL3 253 aa11.7□□□□□ -0.54
CPSF4-209ENST00000465132 IGLV4-60A0A075B6I1 120 aa11.69□□□□□ -0.54
CPSF4-209ENST00000465132 PSCAO43653 123 aa11.69□□□□□ -0.54
CPSF4-209ENST00000465132 SS18Q15532 418 aa11.69□□□□□ -0.54
CPSF4-209ENST00000465132 Q6ZRN7 208 aaPredicted RBP11.69□□□□□ -0.54
CPSF4-209ENST00000465132 C2orf88Q9BSF0 95 aa11.69□□□□□ -0.54
CPSF4-209ENST00000465132 Q9HAA7 133 aa11.69□□□□□ -0.54
CPSF4-209ENST00000465132 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BKO60814 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BJP06899 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BOP23527 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BBP33778 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BDP58876 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BCP62807 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST2H2BEQ16778 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.68□□□□□ -0.54
CPSF4-209ENST00000465132 TEX43Q6ZNM6 134 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BHQ93079 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BNQ99877 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 HIST1H2BMQ99879 126 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 VCX2Q9H322 139 aa11.68□□□□□ -0.54
CPSF4-209ENST00000465132 ATP5LO75964 103 aa11.67□□□□□ -0.54
CPSF4-209ENST00000465132 Q8N3U1 123 aa11.67□□□□□ -0.54
CPSF4-209ENST00000465132 IGKV2D-24A0A075B6R9 120 aa11.66□□□□□ -0.54
CPSF4-209ENST00000465132 ENHOQ6UWT2 76 aa11.66□□□□□ -0.54
CPSF4-209ENST00000465132 IGIPA6NJ69 53 aa11.65□□□□□ -0.54
CPSF4-209ENST00000465132 SERF1AO75920 110 aa11.65□□□□□ -0.54
CPSF4-209ENST00000465132 URB1-AS1Q96HZ7 61 aa11.65□□□□□ -0.54
CPSF4-209ENST00000465132 IGKV3OR2-268A0A0C4DH90 116 aa11.64□□□□□ -0.55
CPSF4-209ENST00000465132 EREGO14944 169 aa11.64□□□□□ -0.55
CPSF4-209ENST00000465132 SEC11AP67812 179 aa11.64□□□□□ -0.55
CPSF4-209ENST00000465132 IGLV4-3A0A075B6K6 122 aa11.63□□□□□ -0.55
CPSF4-209ENST00000465132 IFITM10A6NMD0 228 aa11.63□□□□□ -0.55
CPSF4-209ENST00000465132 CLPSL2Q6UWE3 100 aa11.63□□□□□ -0.55
CPSF4-209ENST00000465132 Q6ZUT4 128 aa11.63□□□□□ -0.55
CPSF4-209ENST00000465132 PGPEP1Q9NXJ5 209 aa11.63□□□□□ -0.55
CPSF4-209ENST00000465132 LINC00959A0A1B0GUT2 108 aa11.62□□□□□ -0.55
CPSF4-209ENST00000465132 EPM2AB3EWF7 344 aa11.62□□□□□ -0.55
CPSF4-209ENST00000465132 HSPB8Q9UJY1 196 aa11.62□□□□□ -0.55
CPSF4-209ENST00000465132 S100A6P06703 90 aa11.61□□□□□ -0.55
CPSF4-209ENST00000465132 FUSP35637 526 aaKnown RBP eCLIP11.61□□□□□ -0.55
CPSF4-209ENST00000465132 PDZD11Q5EBL8 140 aa11.61□□□□□ -0.55
CPSF4-209ENST00000465132 PACRGQ96M98 296 aaPredicted RBP11.61□□□□□ -0.55
CPSF4-209ENST00000465132 TRAV13-1A0A0B4J241 112 aa11.6□□□□□ -0.55
CPSF4-209ENST00000465132 LEPROTL1O95214 131 aa11.6□□□□□ -0.55
CPSF4-209ENST00000465132 NDUFA6P56556 154 aa11.6□□□□□ -0.55
CPSF4-209ENST00000465132 COA6Q5JTJ3 125 aaKnown RBP11.6□□□□□ -0.55
CPSF4-209ENST00000465132 CDPF1Q6NVV7 123 aa11.6□□□□□ -0.55
CPSF4-209ENST00000465132 CHCHD10Q8WYQ3 142 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms