RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 KRTAP26-1Q6PEX3 210 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 PGLYRP4Q96LB8 373 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 BIN3Q9NQY0 253 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 IGLV5-45A0A087WSX0 123 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 A0A1B0GVG6 124 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 RAB19A4D1S5 217 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 IFNA1P01562 189 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 NKX2-5P52952 324 aaPredicted RBP4.65□□□□□ -1.67
USP54-208ENST00000461520 RPL24P83731 157 aaKnown RBP4.65□□□□□ -1.67
USP54-208ENST00000461520 RASL11AQ6T310 242 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 CLPSL2Q6UWE3 100 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 LYZL1Q6UWQ5 148 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 C9orf62Q8N4C0 152 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 DPH3P1Q9H4G8 78 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 NIT2Q9NQR4 276 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 MED9Q9NWA0 146 aa4.65□□□□□ -1.67
USP54-208ENST00000461520 TRBV20OR9-2A0A075B6H5 130 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 IGLV10-54A0A075B6I4 117 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 BCL2P10415 239 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 NTF3P20783 257 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 TAGLN2P37802 199 aaKnown RBP4.64□□□□□ -1.67
USP54-208ENST00000461520 RPL37AP61513 92 aaKnown RBP4.64□□□□□ -1.67
USP54-208ENST00000461520 CNBPP62633 177 aaKnown RBP4.64□□□□□ -1.67
USP54-208ENST00000461520 LCE3CQ5T5A8 94 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 C20orf203Q8NBC4 194 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 TMEM243Q9BU79 118 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 CNFNQ9BYD5 112 aa4.64□□□□□ -1.67
USP54-208ENST00000461520 IGLV4-60A0A075B6I1 120 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.63□□□□□ -1.67
USP54-208ENST00000461520 SMIM1B2RUZ4 78 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 UBE2L6O14933 153 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 CTRLP40313 264 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 SDIM1Q6ZPB5 146 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 SLC51BQ86UW2 128 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 STPG4Q8N801 248 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 RNF213Q63HN8 5207 aa4.63□□□□□ -1.67
USP54-208ENST00000461520 PKHD1L1Q86WI1 4243 aa4.62□□□□□ -1.67
USP54-208ENST00000461520 CIRBPQ14011 172 aaKnown RBP4.62□□□□□ -1.67
USP54-208ENST00000461520 COTL1Q14019 142 aa4.62□□□□□ -1.67
USP54-208ENST00000461520 TCTE3Q8IZS6 198 aa4.62□□□□□ -1.67
USP54-208ENST00000461520 IGHV3-64A0A075B6Q5 118 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 PANO1I0J062 215 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 TEX261Q6UWH6 196 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 SMIM15Q7Z3B0 74 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 GATD1Q8NB37 220 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 OCC1Q8TAD7 63 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 RNF185Q96GF1 192 aa4.61□□□□□ -1.67
USP54-208ENST00000461520 RNASE7Q9H1E1 156 aaKnown RBP4.61□□□□□ -1.67
USP54-208ENST00000461520 RPP21Q9H633 154 aaKnown RBP4.61□□□□□ -1.67
USP54-208ENST00000461520 H7C423 109 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 K7EN84 100 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 NCR2O95944 276 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 HNRNPA3P51991 378 aaKnown RBP4.6□□□□□ -1.67
USP54-208ENST00000461520 ZC2HC1BQ5TFG8 222 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 CFAP161Q6P656 301 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 NOTCH2NLQ7Z3S9 236 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 AKAP14Q86UN6 197 aa4.6□□□□□ -1.67
USP54-208ENST00000461520 TRAV26-2A0A0B4J265 109 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 TMEM250H0YL14 139 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 AMMECR1LQ6DCA0 310 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 FAM231DQ6ZW35 169 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 SPACA4Q8TDM5 124 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 GTSF1Q8WW33 167 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 DPH3Q96FX2 82 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 FAM210AQ96ND0 272 aa4.59□□□□□ -1.67
USP54-208ENST00000461520 SDHAF1A6NFY7 115 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 A8MWL6 223 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 I3L3M4 83 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 GATCO43716 136 aaKnown RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 APCSP02743 223 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 ZNF25P17030 456 aaPredicted RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 RPS10P46783 165 aaKnown RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 FOXA3P55318 350 aaPredicted RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 ALKAL2Q6UX46 152 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 Q6ZRU5 148 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 C15orf56Q8N910 161 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 LYPD6BQ8NI32 183 aa4.58□□□□□ -1.68
USP54-208ENST00000461520 CHCHD10Q8WYQ3 142 aaPredicted RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 RPL39LQ96EH5 51 aaKnown RBP4.58□□□□□ -1.68
USP54-208ENST00000461520 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.57□□□□□ -1.68
USP54-208ENST00000461520 GVQW2A0A096LPI5 108 aaPredicted RBP4.57□□□□□ -1.68
USP54-208ENST00000461520 IGKV3OR2-268A0A0C4DH90 116 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 TRBV6-5A0A0K0K1A5 114 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 IGKV2-29A2NJV5 120 aaPredicted RBP4.57□□□□□ -1.68
USP54-208ENST00000461520 NDUFS6O75380 124 aaKnown RBP4.57□□□□□ -1.68
USP54-208ENST00000461520 CHTF8P0CG12 524 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 FGF6P10767 208 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 RNASEKQ6P5S7 137 aaKnown RBP4.57□□□□□ -1.68
USP54-208ENST00000461520 BORCS7Q96B45 105 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 BTF3L4Q96K17 158 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 PLAC8Q9NZF1 115 aa4.57□□□□□ -1.68
USP54-208ENST00000461520 FAM231BA6NCW3 169 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 ESDP10768 282 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 PMCHP20382 165 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 LRP2P98164 4655 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 COX6A2Q02221 97 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 HIGD2BQ4VC39 106 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 OR5A1Q8NGJ0 315 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 C7orf33Q8WU49 177 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms