RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 C9orf153Q5TBE3 101 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 FAM104AQ969W3 186 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 TRBV10-2A0A0K0K1G8 114 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 IGHV4-39P01824 125 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 ELANEP08246 267 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 IGHV3-30-3P0DP02 117 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 CRYGAP11844 174 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 LY6EQ16553 131 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 K7EQG2 157 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 IGHV4-38-2P0DP08 117 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 TMEM86BQ8N661 226 aa6.24□□□□□ -1.41
VPS50-208ENST00000458707 NTN5Q8WTR8 489 aaPredicted RBP6.24□□□□□ -1.41
VPS50-208ENST00000458707 COL12A1Q99715 3063 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 IGHV3-64A0A075B6Q5 118 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 TRAV12-2A0A075B6T6 113 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 TRIAP1O43715 76 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 SNRPD3P62318 126 aaKnown RBP6.23□□□□□ -1.41
VPS50-208ENST00000458707 ZNF415Q09FC8 603 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 C4orf26Q17RF5 130 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 DPH3Q96FX2 82 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 TIMM21Q9BVV7 248 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 CELSR1Q9NYQ6 3014 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 AKAP6Q13023 2319 aa6.23□□□□□ -1.41
VPS50-208ENST00000458707 TRGV11A0A075B6L2 103 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 IGHV1-58A0A0C4DH39 117 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 H7C2G1 150 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 PAX4O43316 350 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 PSMB8P28062 276 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 Q1RN00 199 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 IGHV4-61A0A0C4DH41 118 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 TMEM89A2RUT3 159 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 TMEM258P61165 79 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 SPINK13Q1W4C9 94 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 HRCT1Q6UXD1 115 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 C15orf53Q8NAA6 179 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 ICOSQ9Y6W8 199 aa6.22□□□□□ -1.41
VPS50-208ENST00000458707 TEX49A0A1B0GTD5 131 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 H3BMM0 161 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 H3BT86 120 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 CD28P10747 220 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 MIAQ16674 131 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 UBE2WQ96B02 151 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 VSIG2Q96IQ7 327 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 CHCHD5Q9BSY4 110 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 SORL1Q92673 2214 aa6.21□□□□□ -1.42
VPS50-208ENST00000458707 TRAV8-3A0A0A6YYJ7 113 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 TRAV8-4A0A0B4J246 113 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 FAM240AA0A1B0GVK7 77 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 H7C423 109 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 TIMM17BO60830 172 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 DEFB121Q5J5C9 76 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 PIK3CD-AS1Q5SR53 167 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 ADAMTSL4-AS1Q5T5F5 129 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 GAGE2AQ6NT46 116 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 C10orf105Q8TEF2 133 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 NDUFA12Q9UI09 145 aa6.2□□□□□ -1.42
VPS50-208ENST00000458707 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.2□□□□□ -1.425e-6■■■■□ 22.8
VPS50-208ENST00000458707 IGKV3-20P01619 116 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 C1orf43Q9BWL3 253 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 A8MTW9 85 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 C19orf84I3L1E1 186 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 LST1O00453 97 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 COX6CP09669 75 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 COX7CP15954 63 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 RPL35AP18077 110 aaKnown RBP6.19□□□□□ -1.42
VPS50-208ENST00000458707 C2orf82Q6UX34 121 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 TMEM61Q8N0U2 210 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 CHCHD7Q9BUK0 85 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 UBE2D4Q9Y2X8 147 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 DNHD1Q96M86 4753 aa6.19□□□□□ -1.42
VPS50-208ENST00000458707 RBMY1A1P0DJD3 496 aaKnown RBP6.18□□□□□ -1.42
VPS50-208ENST00000458707 RBMY1CP0DJD4 496 aa6.18□□□□□ -1.42
VPS50-208ENST00000458707 RBMY1FQ15415 496 aaKnown RBP6.18□□□□□ -1.42
VPS50-208ENST00000458707 C3orf56Q8N813 242 aa6.18□□□□□ -1.42
VPS50-208ENST00000458707 BEX4Q9NWD9 120 aaPredicted RBP6.18□□□□□ -1.42
VPS50-208ENST00000458707 IGLV5-45A0A087WSX0 123 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 ZNF561-AS1K7EIQ3 104 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 PRSS2P07478 247 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 MSMBP08118 114 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 CEMP1Q6PRD7 247 aaPredicted RBP6.17□□□□□ -1.42
VPS50-208ENST00000458707 LINC00336Q6ZUF6 198 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 A0A0U1RRA0 63 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 FAM236AA0A1B0GUQ0 79 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 FAM236BA0A1B0GV22 79 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 PROK1P58294 105 aa6.17□□□□□ -1.42
VPS50-208ENST00000458707 NBPF19A0A087WUL8 3843 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 A0A1W2PRX2 142 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 EPM2AB3EWF7 344 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 NDUFA1O15239 70 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 TIRAPP58753 221 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 C10orf99Q6UWK7 81 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 C2orf48Q96LS8 159 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 VPS13CQ709C8 3753 aa6.16□□□□□ -1.42
VPS50-208ENST00000458707 OXTP01178 125 aa6.15□□□□□ -1.42
VPS50-208ENST00000458707 TRACP01848 142 aa6.15□□□□□ -1.42
VPS50-208ENST00000458707 RNASE13Q5GAN3 156 aaKnown RBP6.15□□□□□ -1.42
VPS50-208ENST00000458707 C1orf195Q5TG92 126 aa6.15□□□□□ -1.42
VPS50-208ENST00000458707 PRIMA1Q86XR5 153 aa6.15□□□□□ -1.42
VPS50-208ENST00000458707 CLEC2BQ92478 149 aa6.15□□□□□ -1.42
VPS50-208ENST00000458707 IGHV4-30-2A0A087WSY4 118 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms