RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DNAJC30Q96LL9 226 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 TPPP3Q9BW30 176 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 DPH3P1Q9H4G8 78 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 TRBV7-3A0A075B6L6 115 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 RTL8CO15255 209 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 DNAH10OSP0CZ25 163 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 UBE2D3P61077 147 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 UBE2D2P62837 147 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 ZNF56Q15929 161 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 TMEM97Q5BJF2 176 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 OR10J3Q5JRS4 329 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 C6orf223Q8N319 242 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 C10orf126Q8N4M7 172 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 GTSF1Q8WW33 167 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 ISOC2Q96AB3 205 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 BORCS7Q96B45 105 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 PGLYRP4Q96LB8 373 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 BIRC6Q9NR09 4857 aa1.65□□□□□ -2.14
VPS13A-208ENST00000423463 A0A1B0GUT8 65 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 HIGD1CA8MV81 97 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 M0QY20 66 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 PPP1R2P9O14990 202 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 MGPP08493 103 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 ADIRFQ15847 76 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 Q1RN00 199 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 LINC01556Q5JQF7 62 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 RASL11AQ6T310 242 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 UQCC3Q6UW78 93 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 DAZ4Q86SG3 579 aaKnown RBP1.65□□□□□ -2.15
VPS13A-208ENST00000423463 WFDC10BQ8IUB3 73 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 NIT2Q9NQR4 276 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 DAZ3Q9NR90 486 aaKnown RBP1.65□□□□□ -2.15
VPS13A-208ENST00000423463 Q9UF83 564 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 V9GYV3 84 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 NACAE9PAV3 2078 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 A0A1B0GW15 77 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 SMIM27A0A1W2PRY6 76 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 IBA57-AS1B1ANH7 110 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 MT-ND4LP03901 98 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 S100A8P05109 93 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 PKIAP61925 76 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 ELOBQ15370 118 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 NUP35Q8NFH5 326 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 CHCHD7Q9BUK0 85 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 TMEM191AQ9H0A3 160 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 NAT8BQ9UHF3 227 aa1.65□□□□□ -2.15
VPS13A-208ENST00000423463 TRBV6-8A0A0A6YYG3 113 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 TMEM218A2RU14 115 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 PPP1R17O96001 155 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 KRTAP5-1Q6L8H4 278 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 KCNIP4Q6PIL6 250 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 NIT1Q86X76 327 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 TRAV8-3A0A0A6YYJ7 113 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 TRBV6-5A0A0K0K1A5 114 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 LINC00862A6NCI5 91 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 IGHV3-30P01768 117 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 IGHV3-33P01772 117 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 KRTAP1-4P0C5Y4 121 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 IGHV3-30-3P0DP02 117 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 IGHV3-30-5P0DP03 117 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 RAB4AP20338 218 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 LAGE3Q14657 143 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 IQCJQ1A5X6 159 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 C2orf66Q6UXQ4 117 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 Q6ZRN7 208 aaPredicted RBP1.64□□□□□ -2.15
VPS13A-208ENST00000423463 NTM-AS1Q6ZSK4 140 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 GATD1Q8NB37 220 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 MRAP2Q96G30 205 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 URGCP-MRPS24S4R325 110 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 DNAH7Q8WXX0 4024 aa1.64□□□□□ -2.15
VPS13A-208ENST00000423463 TRBV25-1A0A075B6N4 114 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 A0A087WX48 190 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 IGHV1-24A0A0C4DH33 117 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 TMEM262E9PQX1 116 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 F8W036 122 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 NCR2O95944 276 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 COTL1Q14019 142 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 FAM104BQ5XKR9 115 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 ATP5L2Q7Z4Y8 100 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 COMMD7Q86VX2 200 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 RMI2Q96E14 147 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 RNF185Q96GF1 192 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 IMMP2LQ96T52 175 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 SEC11CQ9BY50 192 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 ST20Q9HBF5 79 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 RYR1P21817 5038 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 STARD9Q9P2P6 4700 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 A0A1B0GXF2 115 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 SDHAF1A6NFY7 115 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 PPBPP02775 128 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 PMCHP20382 165 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 POLR2KP53803 58 aaKnown RBP1.63□□□□□ -2.15
VPS13A-208ENST00000423463 KRTAP12-2P59991 146 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 HBBP68871 147 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 CXCL6P80162 114 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 Q0VG73 95 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 AMN1Q8IY45 258 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 RPL39LQ96EH5 51 aaKnown RBP1.63□□□□□ -2.15
VPS13A-208ENST00000423463 TMEM243Q9BU79 118 aa1.63□□□□□ -2.15
VPS13A-208ENST00000423463 KLK12Q9UKR0 248 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms