RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 I3L3M4 83 aa8.51□□□□□ -1.05
LINC00339-202ENST00000416769 K7EP13 123 aa8.51□□□□□ -1.05
LINC00339-202ENST00000416769 TRGC2P03986 189 aa8.51□□□□□ -1.05
LINC00339-202ENST00000416769 PMCHP20382 165 aa8.5□□□□□ -1.05
LINC00339-202ENST00000416769 SCXQ7RTU7 201 aa8.5□□□□□ -1.05
LINC00339-202ENST00000416769 MAP1LC3AQ9H492 121 aa8.5□□□□□ -1.05
LINC00339-202ENST00000416769 SMIM2Q9BVW6 85 aa8.49□□□□□ -1.05
LINC00339-202ENST00000416769 TCAPO15273 167 aa8.48□□□□□ -1.05
LINC00339-202ENST00000416769 PLA2G1BP04054 148 aaKnown RBP8.48□□□□□ -1.05
LINC00339-202ENST00000416769 COTL1Q14019 142 aa8.48□□□□□ -1.05
LINC00339-202ENST00000416769 LELP1Q5T871 98 aa8.48□□□□□ -1.05
LINC00339-202ENST00000416769 NTM-AS1Q6ZSK4 140 aa8.48□□□□□ -1.05
LINC00339-202ENST00000416769 KIR2DL4Q99706 377 aa8.48□□□□□ -1.05
LINC00339-202ENST00000416769 TRBV6-8A0A0A6YYG3 113 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 TRAV8-6A0A0B4J262 113 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 LOC389332A0A1B0GUA5 103 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 Q8N8P6 123 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 BAALCQ8WXS3 180 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 NXT2Q9NPJ8 142 aaKnown RBP8.47□□□□□ -1.05
LINC00339-202ENST00000416769 PKHD1L1Q86WI1 4243 aa8.47□□□□□ -1.05
LINC00339-202ENST00000416769 TRBV25-1A0A075B6N4 114 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 TMEM238LA0A1B0GVL6 79 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 K7EMI3 77 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 IFI27P40305 119 aaPredicted RBP8.46□□□□□ -1.06
LINC00339-202ENST00000416769 IQCJQ1A5X6 159 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 PRSS3P2Q8NHM4 247 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 C18orf32Q8TCD1 76 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 DEFB104AQ8WTQ1 72 aa8.46□□□□□ -1.06
LINC00339-202ENST00000416769 IGHV1-24A0A0C4DH33 117 aa8.45□□□□□ -1.06
LINC00339-202ENST00000416769 TSHBP01222 138 aa8.45□□□□□ -1.06
LINC00339-202ENST00000416769 LINC01546A6NGU7 62 aa8.44□□□□□ -1.06
LINC00339-202ENST00000416769 ESDP10768 282 aa8.44□□□□□ -1.06
LINC00339-202ENST00000416769 FCER1GP30273 86 aa8.44□□□□□ -1.06
LINC00339-202ENST00000416769 HNRNPA3P51991 378 aaKnown RBP8.44□□□□□ -1.06
LINC00339-202ENST00000416769 RAB5BP61020 215 aa8.44□□□□□ -1.06
LINC00339-202ENST00000416769 Q0VG73 95 aa8.44□□□□□ -1.06
LINC00339-202ENST00000416769 H7C423 109 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 LINC00614P0C842 121 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 AMTP48728 403 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 ORMDL2Q53FV1 153 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 NIT1Q86X76 327 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 TMEM243Q9BU79 118 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 CHCHD7Q9BUK0 85 aa8.43□□□□□ -1.06
LINC00339-202ENST00000416769 C1orf196B1AJZ1 125 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 G0S2P27469 103 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 PKIAP61925 76 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 LAGE3Q14657 143 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 FA2HQ7L5A8 372 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 CIRBP-AS1Q8TBR5 109 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 TMEM18Q96B42 140 aa8.42□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BKO60814 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BJP06899 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BOP23527 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BBP33778 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BDP58876 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BCP62807 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST2H2BEQ16778 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BHQ93079 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 URB1-AS1Q96HZ7 61 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BNQ99877 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 HIST1H2BMQ99879 126 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 CHCHD5Q9BSY4 110 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 TM2D2Q9BX73 214 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 PLA2G2DQ9UNK4 145 aa8.41□□□□□ -1.06
LINC00339-202ENST00000416769 TMEM262E9PQX1 116 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 UBE2L6O14933 153 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 SERTAD4-AS1Q5TG53 156 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 BAGE3Q86Y29 109 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 C20orf203Q8NBC4 194 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 CHCHD1Q96BP2 118 aaKnown RBP8.4□□□□□ -1.06
LINC00339-202ENST00000416769 CHAC1Q9BUX1 264 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 AP5S1Q9NUS5 200 aa8.4□□□□□ -1.06
LINC00339-202ENST00000416769 A0A1B0GUV1 79 aa8.39□□□□□ -1.07
LINC00339-202ENST00000416769 SMAGPQ0VAQ4 97 aa8.39□□□□□ -1.07
LINC00339-202ENST00000416769 GAGE6Q13070 117 aa8.39□□□□□ -1.07
LINC00339-202ENST00000416769 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.38□□□□□ -1.07
LINC00339-202ENST00000416769 A0A087WX48 190 aa8.38□□□□□ -1.07
LINC00339-202ENST00000416769 IGKV2-29A2NJV5 120 aaPredicted RBP8.38□□□□□ -1.07
LINC00339-202ENST00000416769 LINC01549A6NIU2 74 aa8.38□□□□□ -1.07
LINC00339-202ENST00000416769 IGKV2D-24A0A075B6R9 120 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 TRAV8-3A0A0A6YYJ7 113 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 FGF6P10767 208 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 ZNF25P17030 456 aaPredicted RBP8.37□□□□□ -1.07
LINC00339-202ENST00000416769 AMMECR1LQ6DCA0 310 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 RNASEKQ6P5S7 137 aaKnown RBP8.37□□□□□ -1.07
LINC00339-202ENST00000416769 C2orf66Q6UXQ4 117 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 MRPL52Q86TS9 123 aaKnown RBP8.37□□□□□ -1.07
LINC00339-202ENST00000416769 TIMM21Q9BVV7 248 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 KLK12Q9UKR0 248 aa8.37□□□□□ -1.07
LINC00339-202ENST00000416769 CSDC2Q9Y534 153 aaKnown RBP8.37□□□□□ -1.07
LINC00339-202ENST00000416769 RBX1P62877 108 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 RPL39P62891 51 aaKnown RBP8.36□□□□□ -1.07
LINC00339-202ENST00000416769 MPV17L2Q567V2 206 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 LCE2CQ5TA81 110 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 TOMM6Q96B49 74 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 CYSLTR1Q9Y271 337 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 UBE2D4Q9Y2X8 147 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 PYGO1Q9Y3Y4 419 aa8.36□□□□□ -1.07
LINC00339-202ENST00000416769 SERF1AO75920 110 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms